Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00542 ATGTGGTTTCTTGGTTGGAAAGGGCCATCGGGGTTCTCAGCCTCTTCCACCGCCGAACAAGTCACTCAAGGGATCGATGGAACCGGTCTCACTGCCATCGTCACAGGAGCATCAAGTGGTCTTGGTCTGGAGACCACCCGGGTTCTTGCATTGCGTGGTGTCCATGTTGTTATGGCAGTAAGGAATGTGGATACTGGTAAGAATGTCAAAGAAACAATACTGAAGGAAATTCCCACTGCTAAAATTGATGTTATGGAGTTAGATCTTAACTCTATGGCATCAGTAAGGAAATTTGCAGCAGATTTTCATTCATCTGGTCTTCCACTCAATATTCTAATTAACAATGCAGGGGTGATGGCAACTCCATTCATGCTTTCCCAAGACAACATTGAATTACAGTTTGCAACCAATCATTTAGGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAGAAAACTGTACGGGAATGCAACCGGGAAGGAAGGATAGTTATTCTATCATCAGAGGCACACAGATTTCCATATCGTGAAGGGATTTGTTTTGATAAGATCAATGATGAATCAGGATACAACAGTTATTTTGCTTATGGACAATCAAAGCTTGCTAATATTTTGCATGCAAATGAGCTTACAAGGCGCTTGAAGGAAGGAGGAGTGGAAATAACTGTCAACTCCCTTCATCCTGGTTCAATCATTACAAATATTCTGCGACACCATGGTTATGTTAATGCCGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAGGGAGCTGCAACTCAATGTTACGTGGCATTGCATCCACAAGTCAAGGGAATATCTGGTGAATACTTTATGGATAGCAATAAGGCAAACCCAACCTCTCTGGCTAAAGATTCAGAGCTGGCGAAAAAACTATGGGAATTCAGCTTAAGCTTGACTAATCCAAAGTAG 948 0.4167 MWFLGWKGPSGFSASSTAEQVTQGIDGTGLTAIVTGASSGLGLETTRVLALRGVHVVMAVRNVDTGKNVKETILKEIPTAKIDVMELDLNSMASVRKFAADFHSSGLPLNILINNAGVMATPFMLSQDNIELQFATNHLGHFLLTNLLLETMKKTVRECNREGRIVILSSEAHRFPYREGICFDKINDESGYNSYFAYGQSKLANILHANELTRRLKEGGVEITVNSLHPGSIITNILRHHGYVNAVANMVGKYFLKNVQQGAATQCYVALHPQVKGISGEYFMDSNKANPTSLAKDSELAKKLWEFSLSLTNPK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00542 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Rops2g00542 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Rops2g00542 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Rops2g00542 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Rops2g00542 315 Gene3D - 22 315 - -
Rops2g00542 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 287 IPR036291 -
Rops2g00542 315 PANTHER RETINOL DEHYDROGENASE 9 312 - -
Rops2g00542 315 CDD retinol-DH_like_SDR_c_like 29 305 - -
Rops2g00542 315 Pfam short chain dehydrogenase 31 179 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00542 Rops-Chr2 7904757 7908331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00542 33 291 Acyl Lipid Metabolism Gene Families AT1G63380 27.737 7.77e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00542 - K19329 gmx:121174911 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00542 2 7904757 7908331 Rops2g00542 2 7904757 7908331 ECH