Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00529 ATGGGACACGGTGAAAAAGGACGACCCTTCAAAAAACTCAAAGCCTCTTCCAAATTCGAAGATACTCGGAAAGGATTCGCAGAAGATGATGATGTATATGGCGGCGAAGATGCATATGGTGAAGATGACGAAGGCAAAACCAAGGATTTTAGCAAATTAGAGCTGAAACAGGATCACTCCAATCGCCCTCTGTGGGCTTGTGGCAATGGCCGCATATTCCTTGAGACCTTCTCTCCTTTGTACAAGCAAGCTTATGATTTTCTTATTGCCATTGCCGAGCCTGTTTGCAGGCCGGAGTCAATGCACGAATACAATCTTACTCCGCATTCACTGTATGCTGCGGTTTCGGTTGGTCTAGAAACAGAAACAATCATAGCTGTCTTGAATAAATTATCCAAGACCAAGCTTCCTAAAGAGATGATCAAATTTATACATGATTCTACTGCAAATTATGGCAAAGTGAAACTCGTGCTTAAGAAGAATCGCTACTTTATTGAATCTCCATTTCCAGAGGTATTGAAGACACTGCTCAGGGATGATACTATATCTCGAGCAAGGATTACTTCTGAGGGTGCAAATGGAGATGGATTTACCATAAGCAAAGCAGCAGGTGAAATTGGAGGCACTCATGACGAGTTGCTAAATGAGGCAGAAGTGGCAGCGGCTGCAGAAGAGAAGGAAGCTCATTCATTTGAAATTGATCCTTCTCAGGTTGAAAATGTAAAGCAACGTTGTTTGCCAAATGCATTAAATTATCCCATGTTGGAGGAGTATGACTTCAGAAATGATACAGTGAACCCAGACCTCGACATGGAACTAAAGCCTCAAGCACAACCACGGCCATATCAAGAGAAGAGCCTTAGTAAAATGTTCGGAAATGGTAGAGCAAGATCTGGTATAATAGTTCTGCCCTGTGGTGCTGGGAAGTCCCTAGTTGGTGTTTCTGCAGCTTGCCGGATAAAAAAGAGCTGCCTTTGTTTGGCAACAAATGCTGTCTCTGTAGATCAGTGGGCTTTTCAGTTTAAACTATGGTCAACTATCCGGGAAGAACAAATATGTCGTTTCACATCTGATAGCAAAGAGAGATTCCGTGGTAATGCTGGAGTTGTTGTGACAACATATAATATGGTTGCTTTTGGTGGTAAACGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTTCTCATGGACGAGGTACATGTGGTTCCGGCCCATATGTTTCGAAAGGTCATTAGTCTCACTAAATCTCACTGCAAACTTGGGCTCACAGCCACACTTGTGAGAGAGGATGAACGTATTACAGATCTGAACTTCCTAATTGGTCCCAAACTGTATGAGGCAAATTGGTTAGATCTTGTAAAAGGTGGGTTTATTGCAAATGTACAATGTGCTGAAGTATGGTGTCCAATGACAAAAGAATTTTTTGCTGAGTATTTGAAGAAAGAGAACTCCAAGAAGAGGCAGGCCCTTTATGTGATGAATCCAAACAAATTCAGAGCATGTGAGTTTCTCATACATTACCATGAAAGGGCACGTGGTGATAAAATTATAGTCTTTGCTGATAATCTTTTTGCTCTCACTGAGTATGCCATGAAACTCCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGAGGACAAAAATTCTACAAGCATTCAAAACTAGCAAAGACGTAAATACTATTTTTCTTTCCAAGGTGGGTGACAACTCAATTGACATTCCTGAAGCAAATGTGATTATTCAGATCTCTTCACATGCTGGTTCAAGGCGTCAAGAAGCTCAACGTCTAGGTCGTATTCTTAGGGCAAAGGGAAAGCTTCAGGATAGGATGGCAGGGGGTAAGGAGGAGTATAATGCATTTTTTTATTCCCTGGTGTCAACTGATACCCAGGAGATGTATTACTCAACTAAGAGGCAGCAATTTTTAATTGATCAGGGTTACAGCTTTAAGGTAATTACAAGCTTGCCTCCACCTGATGAAGGACCTCGCTTGAACTATTATCATCTTGAGGATCAATTGGCACTTCTTGGAAAGGTATTGAGTGCTGGTGATGATGCAGTTGGACTAGAGCAACTAGAAGAAGATACAGATGAAATTGCTCTTCGTAGTGCCCGTCGTTCGCAAGCATCCATGAGTGCAATGTCAGGTGCAAAAGGGATGGTTTATATGGAGTACAGTACTGGACGTAACAAAGGCCAAGGACAGATCAAGAGCAAGCCGAAAGATCCTTCAAAAAGACACTTCTTGTTTAAAAGACGATATGGCCCAACCTAA 2304 0.4184 MGHGEKGRPFKKLKASSKFEDTRKGFAEDDDVYGGEDAYGEDDEGKTKDFSKLELKQDHSNRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLNKLSKTKLPKEMIKFIHDSTANYGKVKLVLKKNRYFIESPFPEVLKTLLRDDTISRARITSEGANGDGFTISKAAGEIGGTHDELLNEAEVAAAAEEKEAHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLIHYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDEGPRLNYYHLEDQLALLGKVLSAGDDAVGLEQLEEDTDEIALRSARRSQASMSAMSGAKGMVYMEYSTGRNKGQGQIKSKPKDPSKRHFLFKRRYGPT* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00529 767 CDD SF2_C_XPB 471 635 - -
Rops2g00529 767 FunFam Probable DNA repair helicase RAD25 269 460 - -
Rops2g00529 767 MobiDBLite consensus disorder prediction 738 767 - -
Rops2g00529 767 Coils Coil 214 234 - -
Rops2g00529 767 PRINTS Xeroderma pigmentosum group B protein signature 464 486 - -
Rops2g00529 767 PRINTS Xeroderma pigmentosum group B protein signature 398 418 - -
Rops2g00529 767 PRINTS Xeroderma pigmentosum group B protein signature 62 82 - -
Rops2g00529 767 PRINTS Xeroderma pigmentosum group B protein signature 148 167 - -
Rops2g00529 767 PRINTS Xeroderma pigmentosum group B protein signature 716 735 - -
Rops2g00529 767 PRINTS Xeroderma pigmentosum group B protein signature 569 587 - -
Rops2g00529 767 PRINTS Xeroderma pigmentosum group B protein signature 625 648 - -
Rops2g00529 767 PRINTS Xeroderma pigmentosum group B protein signature 502 517 - -
Rops2g00529 767 PRINTS Xeroderma pigmentosum group B protein signature 291 313 - -
Rops2g00529 767 PRINTS Xeroderma pigmentosum group B protein signature 588 613 - -
Rops2g00529 767 PRINTS Xeroderma pigmentosum group B protein signature 260 286 - -
Rops2g00529 767 PRINTS Xeroderma pigmentosum group B protein signature 522 544 - -
Rops2g00529 767 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 507 673 IPR001650 -
Rops2g00529 767 Pfam ERCC3/RAD25/XPB C-terminal helicase 460 708 IPR032438 -
Rops2g00529 767 FunFam Putative DNA repair helicase rad25 461 703 - -
Rops2g00529 767 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 452 IPR014001 -
Rops2g00529 767 Pfam Helicase conserved C-terminal domain 64 187 IPR032830 -
Rops2g00529 767 Gene3D - 269 460 IPR027417 -
Rops2g00529 767 CDD DEXHc_XPB 271 440 - -
Rops2g00529 767 MobiDBLite consensus disorder prediction 27 46 - -
Rops2g00529 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 454 IPR027417 -
Rops2g00529 767 PANTHER RAD25/XP-B DNA REPAIR HELICASE 53 735 - -
Rops2g00529 767 Gene3D - 461 701 IPR027417 -
Rops2g00529 767 Pfam Type III restriction enzyme, res subunit 278 434 IPR006935 GO:0003677|GO:0005524|GO:0016787
Rops2g00529 767 NCBIfam DNA repair helicase rad25 49 762 IPR001161 GO:0003678|GO:0006289|GO:0006367
Rops2g00529 767 SMART helicmild6 535 613 IPR001650 -
Rops2g00529 767 SMART ultradead3 275 456 IPR014001 -
Rops2g00529 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 710 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00529 K10843 - gmx:100789550 1392.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00529 2 7702792 7709836 Rops2g00529 2 7702792 7709836 ECH