Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00462 ATGGAAAAGCTTGTTGTGAAACTCATTTGCATGTTTCATGTGCTTCTGCTTCTTTGCCCAACTTTTGCCTTTGCTGGCCATGACTATGGTCAAGCTCTGAGTAAAAGCATTCTCTTTTATGAAGCTCAGAGATCTGGGTATCTTCCCCATAACCAGAGAGTAACTTGGAGAGCTCATTCTGGTCTTCAAGATGGCAAGGCAAGCGGGGTAGATCTTGTCGGTGGGTACTATGATGCAGGGGACAATGTTAAGTTTGGTCTACCCATGGCATTCACTGTTACAATGTTGTCATGGAGCATCATAGAATATGGCAAACAAATGGCTGCTAGTGGTGAACTTGGTCATGCTATGGAAGCTGTGAAGTGGGGTACTGACTACTTCATCAAAGCACACCCTCAACCCAATGTTCTCTATGGAGAGGTAGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCGGAGGATATGACCACAGACCGTCATGCTTACAAGGTCGATCCAAGTAATCCCGGGTCGGATATCGCCGGTGAAACAGCCGCCGCAATGGCCGCCGCCTCCATCGTTTTCCGCCACTCTAATCCTGCCTACACCGGCGAACTCCTCCGCCATGCTTACCAGTTATTTGATTTTGCGGATAAATATAGAGGCAAATATGACAGCAGCATTACTGTTGCCCAAAAATACTACAGATCCATCAGTGGTTACAATGACGAATTGCTCTGGGCTGCTGCATGGTTGTATCAAGCATCTAACAATCAGTATTACTTGGATTACCTTGGGAAAAATGGTGACTCCATGGGTGGAACTGGTTGGTCCATGACTGAATTTAGCTGGGATGTCAAGTATGCTGGGGTTCAGACATTAGTTTCTAAGTTCCTGATGCAAGGCAAAGCTAACCATCATGCACCAGTGTTTGTGAGATATCAGCAGAAGGCTGAGAATTTCATGTGTTCATGCCTTGGAAAGGGTACTCGCAATGTTCAAAAGACTCCTGGTGGGCTCATCTTCCGTCAGAGATGGAACAACATGCAGTTTGTCACAAGTGCCTCCTTTTTAGCCACTGTCTACTCTGACTATCTTGCTTCTTCTGGTAAAAATTTGAGATGTGCTTCAGGCAATGTCGGTCCTGCTGAGCTTCTCTCCTTTGCAAAGTCTCAGGTGGACTACATTCTTGGAGACAACCCAAGAGCCACTAGTTACATGGTGGGCTATGGAAGCAACTTTCCTCAGAGAACTCACCACAGAGGTTCATCCATTGTTTCCATCAAGGATAACCCTTCATTTGTTACCTGCCGTGGAGGTTATGCTACTTGGTTTAGCAGCAAAAGGAGCGACCCCAATATACTCAATGGTGCTCTTGTTGGTGGACCTGATGCATATGATGATTTTGCTGACGAAAGAGATAATTATGAACAAACAGAACCAGCAACCTACAACAATGCTCCTCTTATAGGTATTCTATCACGATTAAGTGGAGGCCATGGTGGTTATAACCAGCTCCTTCCAGTTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCCCAACCAAGCCCTAATCCCAAGAAATCTCCATCTCCAGCTTCATGGACACCAATTTCCATTGAACAGAAAATGACCAGCTCATGGGTTGCCAATGGAAGAACTTATTACAGATACTCCACAGTGGTGACTAACAAATCTACCAAGAATCTCAAGTCTCTCAATCTTTCAATATCCAAGCTTTATGGTCCAATCTGGGGACTCACAAAGTCCGGTGAGGTATACACGTTCCCATCATGGCTCAGCTCATTATCAGCAGGTAAAAGCCTAGAATTTGTCTACATCCATTCTGCTTCTCCAGCAGATGTCTCAGTTGCCAAGTACTTATTGGCTTGA 1881 0.454 MEKLVVKLICMFHVLLLLCPTFAFAGHDYGQALSKSILFYEAQRSGYLPHNQRVTWRAHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMLSWSIIEYGKQMAASGELGHAMEAVKWGTDYFIKAHPQPNVLYGEVGDGNTDHYCWQRPEDMTTDRHAYKVDPSNPGSDIAGETAAAMAAASIVFRHSNPAYTGELLRHAYQLFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGKNGDSMGGTGWSMTEFSWDVKYAGVQTLVSKFLMQGKANHHAPVFVRYQQKAENFMCSCLGKGTRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASSGKNLRCASGNVGPAELLSFAKSQVDYILGDNPRATSYMVGYGSNFPQRTHHRGSSIVSIKDNPSFVTCRGGYATWFSSKRSDPNILNGALVGGPDAYDDFADERDNYEQTEPATYNNAPLIGILSRLSGGHGGYNQLLPVVVPAPKPVVTKPQPSPNPKKSPSPASWTPISIEQKMTSSWVANGRTYYRYSTVVTNKSTKNLKSLNLSISKLYGPIWGLTKSGEVYTFPSWLSSLSAGKSLEFVYIHSASPADVSVAKYLLA* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00462 626 MobiDBLite consensus disorder prediction 512 532 - -
Rops2g00462 626 Pfam Glycosyl hydrolase family 9 29 488 IPR001701 GO:0004553|GO:0005975
Rops2g00462 626 MobiDBLite consensus disorder prediction 512 527 - -
Rops2g00462 626 Gene3D - 26 494 IPR012341 GO:0005975
Rops2g00462 626 PANTHER ENDO-1,4-BETA-GLUCANASE 11 492 - -
Rops2g00462 626 FunFam Endoglucanase 25 496 - -
Rops2g00462 626 Pfam Carbohydrate binding domain CBM49 534 611 IPR019028 GO:0030246
Rops2g00462 626 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 464 482 IPR033126 -
Rops2g00462 626 SUPERFAMILY Six-hairpin glycosidases 26 504 IPR008928 GO:0005975
Rops2g00462 626 SMART CBM49_2 534 614 IPR019028 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00462 Rops-Chr2 6583417 6588196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00462 19 626 Glycoside Hydrolase AT1G64390 78.289 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00462 K01179 - gmx:100801949 1134.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00462 2 6583417 6588196 Rops2g00462 2 6583417 6588196 ECH