Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00425 ATGCCGGGCCTGGTCAAAACTCCACCGGAAGCCCCACCGCTCCGAATCTCTTTACCCGAAACCCCAAGATCCGAACCCGTTAACACCAAAACCACCCCATCCCCATCCCCATCCCCACTCCCACTCCCTAAAAAACCACCCTCCCCTTCCCCTTCTTCCCGTTCCAAGAAGAAAACTCCAGAAACCCCTCCCAACAATTTCCTCTCCGAGGCATCCCTCGACAACCCCGATCTGGGCCCATTCCTCCTTAAGCTGGCCCGTGACACCATCGCCTCAGGTGAAGGCCCCACCAAGGCCCTCGACTACGCCATCCGGGCCTCCAAATCATTCGAACGCTGCGCCGTCGAAGGCGAGCCCAGCCTCGACCTCGCCATGAGCCTCCACGTCTTGGGAGCCATTTACTGTAGCCTCGGCCGTTTCGAAGAAGCCGTGCCCGTTCTAGAACGTGCGATCCATGTCCCTGACGTGACACGTGGCGCAGATCACGCCCTCGCTGCTTTCTCCGGTTACATGCAGTTAGGTGACACGTTCTCCATGCTCGGCCACGTGGACAAATCCATTTCTTGCTACGATCAAGGCCTTCAGATTCAGATCCAAACCTTGGGAGAAACCGATCCACGTGTCGGAGAAACTTGTCGGTACTTGGCTGAAGCTAATGTTCAAGCGATGCAGTTCGATAAAGCAGACGAGCTTTGTAAGAAGACTCTGGAGATTCATCGTGCTCATAGTGAACCTGCTTCTCTTGAAGAAGCTGCTGATAGAAGACTCATGGCTCTTATCTGTGAGGCCAAGGGAGATTACGAGAATGCCCTTGAACATCTTGTTCTTGCAAGCATGGCCATGATTGCTAATGGACAAGACAACGAGGTTGCTTCCATTGATGTCAGCATTGGGAACATTTACATGTCTCTCTGTCGTTTTGATGAGGCGATTTTCTCGTACCAGAAGGCGCTTACTGTGTTTAAATCTGCCAAGGGTGAAAACCACCCTTCGGTTGCTTCTGTGTTTGTGAGACTGGCTGATTTGTATCATAGGACTGGGAAGCTTCGAGAATCGAAGTCTTATTGTGAGAATGCTCTGAGGATTTATTCTAAGCCGGTGCCGGGGACCACATCTGAGGAGATTGCTGGTGGTTTGACGGAGGTTTCGGCGATTTTTGAATCGGTGGATGATCCGGAGGAGGCGTTGAAGTTGTTGCATAAGGCGATGAAGTTGTTGGAGGATAAGCCGGGACAGCATAGCACGATTGCGGGGATTGAAGCTAGGATGGGAGTGATGTATTACATGATTGGGAGGTATGAAGAAGCCAGGAGTGCTTTTGAGAGTGCTGTGGCAAAACTGAGGGCTAGTGGGGAGAGGAAATCTGCGTTCTTTGGTGTTGTTTTGAATCAGATGGGATTGGCGTGTGTGCAATTGTTTAAGATTGATGAGGCTGCTGAATTGTTTGAAGAAGCTAGGGGAATTCTTGAACAGGAGTGTGGTCCCTGTCATCAAGATACTCTCGGAGTATACAGCAATCTTGCGGCTACTTATGATGCGATGGGAAGAGTGGGAGATGCAATTGAAATCTTAGAATATGTCCTTAAGTTGAGGGAGGAAAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGTCGGCTGGCTGAGCTCCTGAAAGAAGCAGGCAAGACACGTGACAGAAAAGCGAAATCTCTGGAAAACCTTATTGATCCAAACTCAAAGAGGACAAAGAAGGAGGGGACAAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1782 0.5022 MPGLVKTPPEAPPLRISLPETPRSEPVNTKTTPSPSPSPLPLPKKPPSPSPSSRSKKKTPETPPNNFLSEASLDNPDLGPFLLKLARDTIASGEGPTKALDYAIRASKSFERCAVEGEPSLDLAMSLHVLGAIYCSLGRFEEAVPVLERAIHVPDVTRGADHALAAFSGYMQLGDTFSMLGHVDKSISCYDQGLQIQIQTLGETDPRVGETCRYLAEANVQAMQFDKADELCKKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYENALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSAKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTSEEIAGGLTEVSAIFESVDDPEEALKLLHKAMKLLEDKPGQHSTIAGIEARMGVMYYMIGRYEEARSAFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPNSKRTKKEGTKRWPGLGFRI* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00425 593 MobiDBLite consensus disorder prediction 32 50 - -
Rops2g00425 593 Gene3D Tetratricopeptide repeat domain 278 454 IPR011990 GO:0005515
Rops2g00425 593 Gene3D Tetratricopeptide repeat domain 71 166 IPR011990 GO:0005515
Rops2g00425 593 MobiDBLite consensus disorder prediction 558 593 - -
Rops2g00425 593 SUPERFAMILY TPR-like 205 530 IPR011990 GO:0005515
Rops2g00425 593 MobiDBLite consensus disorder prediction 1 73 - -
Rops2g00425 593 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 37 576 - -
Rops2g00425 593 MobiDBLite consensus disorder prediction 52 72 - -
Rops2g00425 593 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 453 570 - -
Rops2g00425 593 Pfam Tetratricopeptide repeat 290 364 - -
Rops2g00425 593 Pfam Tetratricopeptide repeat 461 533 - -
Rops2g00425 593 Coils Coil 542 562 - -
Rops2g00425 593 SMART tpr_5 209 242 IPR019734 GO:0005515
Rops2g00425 593 SMART tpr_5 167 200 IPR019734 GO:0005515
Rops2g00425 593 SMART tpr_5 501 534 IPR019734 GO:0005515
Rops2g00425 593 SMART tpr_5 251 284 IPR019734 GO:0005515
Rops2g00425 593 SMART tpr_5 124 157 IPR019734 GO:0005515
Rops2g00425 593 SMART tpr_5 333 366 IPR019734 GO:0005515
Rops2g00425 593 SMART tpr_5 417 450 IPR019734 GO:0005515
Rops2g00425 593 SMART tpr_5 376 409 IPR019734 GO:0005515
Rops2g00425 593 SMART tpr_5 291 324 IPR019734 GO:0005515
Rops2g00425 593 SMART tpr_5 459 492 IPR019734 GO:0005515
Rops2g00425 593 Gene3D Tetratricopeptide repeat domain 455 570 IPR011990 GO:0005515
Rops2g00425 593 MobiDBLite consensus disorder prediction 1 16 - -
Rops2g00425 593 Gene3D Tetratricopeptide repeat domain 167 277 IPR011990 GO:0005515
Rops2g00425 593 Pfam MalT-like TPR region 128 277 IPR041617 -
Rops2g00425 593 ProSiteProfiles TPR repeat profile. 291 324 IPR019734 GO:0005515
Rops2g00425 593 MobiDBLite consensus disorder prediction 558 587 - -
Rops2g00425 593 ProSiteProfiles TPR repeat profile. 124 157 IPR019734 GO:0005515
Rops2g00425 593 SUPERFAMILY TPR-like 287 421 IPR011990 GO:0005515
Rops2g00425 593 SUPERFAMILY TPR-like 119 272 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00425 Rops-Chr2 6201750 6203300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00425 130 336 Glycosyltransferase AT3G04240 24.268 1.00e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00425 - - gmx:100815100 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00425 2 6201750 6203300 Rops2g00425 2 6201750 6203300 ECH