Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00421 ATGACGATCACATATCAATCCACCACAACCTTCTCACCTTCCTTCATCTCCACTCGGAACGATTTGACTCAGAAAACTCGTCTCCCCTGCCACGTCACCTTCACTCAGTTCCGCAGAAACCAAACTCGCTCTTCAACTCGTCGACTCGTCGTTTCTTCTCGACTCAACTCGTCGAAATCCTCCGATGCCGGTGGCTTTGTCTCTCCTGACAACGGCGACGTCGCCTACGAGCTTCACCACGATTTATCGCCGCAGCGTCGGAGGAGTGGATCGCCGGTGTTCGTTACGCTTCCGGTGAATTCGGTGAGTAGAGATGGGAAGATTTGGAGGCCGAAAGCTATGATGTTATCGCTTAGGGCACTTGCTGCGGCGGGTGTGGAAGGTGTCGTTGTGGAGATTTGGTGGGGATTGGTTGAGAGGAATGGGCCTAGGGTTTATGATTGGAGAGGTTATCGTGAACTTGTTATGATGGCTTGCATGTGTGGCCTTAAGGTTCGTGCTGTTCTTGCGTTTCATCAACATGGCACTGGCCCTGATGATCCTAATTGGATACCACTTCCTCGATGGGTGCTTGATGAGATACAGACAGATCCAGAGTTGGCATATTCTGACAGATTTGGAAGAAGAAATATTGAATACATTTCCCTTGGATGTGATATCCTTCCTGTGCTACGTGGACGTTCTCCTATTCAAGCATATGCAGATTTTATGAGGGACTTTAGGGACACTTTCAGGCCTTCACTTGGTGTTATCATTACAGGTGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTCTCTTCCCAAAAGCCAAATTCAGCTCGGCCTCATGAACTTGGAGAGTTTCAGTGCTACGATAAGTATATGCTTGCTTCTCTCAATGCCTCTGCAAGAAATATTGGAAAACGTGAATGGGGAAATGGTGGTCCATTTGGTACTGGAAGTTTGATGCAAAATCCTCAGCATACTGAATTCTTTAGAAATGAGGATGGCTCTTGGAACTCTCCATACGGTAAATTTTTCCTTGAATGGTACTCGGATATGCTGCTACTGCATGGAGAGAGAATTTGCAGGGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCATATATCGGCAAAAGTGGCTGCTATTCACTGGCACTATGTCACGGAGTCCCATCCGTCAGAGTTAACAGCAGGCTATTATAATACTTCTAAAAGGGATGGATACTTACCCATTGCTCGCATGTTTAGTAAGTATGGATTCTCGATGTGCTGCTCTTGCTTTGAAATGCAAGATGCAGTAATGAAGAAGATCAATCCAGATGGTAGCCCTGAAGGTTTTCTTAGACAGCTTTTGCTGGCTGCTAGGCTCTTTGACATATCACTGGAAGGTCAAAATTTTTCAACTGATTTGGATGATGATGCATTCACCCAGGTGCTGAAGATGTCAAAATTTTATTCAGATGGGATTGAGAAGCGCCCCTTCTCATTCAACTTAGTAAGAATGGACAAAAAAATGTTTGAACCCCGAAATTGGGATCGGTTTACTCGTTTTGTGAGGCAAATGTCTGGTGGAAACATTTTTCGAGCCAGATTAAATTCCATAGGTAACATACGGTTGAAGACCACACCAGGGGCTGCAGAAGTGGGACTGTTGTACCAGCTATACCAGCACTGTTGA 1677 0.455 MTITYQSTTTFSPSFISTRNDLTQKTRLPCHVTFTQFRRNQTRSSTRRLVVSSRLNSSKSSDAGGFVSPDNGDVAYELHHDLSPQRRRSGSPVFVTLPVNSVSRDGKIWRPKAMMLSLRALAAAGVEGVVVEIWWGLVERNGPRVYDWRGYRELVMMACMCGLKVRAVLAFHQHGTGPDDPNWIPLPRWVLDEIQTDPELAYSDRFGRRNIEYISLGCDILPVLRGRSPIQAYADFMRDFRDTFRPSLGVIITGVQIGMGPGGELRYPSFSSQKPNSARPHELGEFQCYDKYMLASLNASARNIGKREWGNGGPFGTGSLMQNPQHTEFFRNEDGSWNSPYGKFFLEWYSDMLLLHGERICREAETIFRGTEVHISAKVAAIHWHYVTESHPSELTAGYYNTSKRDGYLPIARMFSKYGFSMCCSCFEMQDAVMKKINPDGSPEGFLRQLLLAARLFDISLEGQNFSTDLDDDAFTQVLKMSKFYSDGIEKRPFSFNLVRMDKKMFEPRNWDRFTRFVRQMSGGNIFRARLNSIGNIRLKTTPGAAEVGLLYQLYQHC* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00421 558 Pfam Glycosyl hydrolase family 14 94 517 IPR001554 GO:0000272|GO:0016161
Rops2g00421 558 Gene3D Glycosidases 83 542 - -
Rops2g00421 558 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 37 523 IPR001554 GO:0000272|GO:0016161
Rops2g00421 558 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 337 356 IPR001554 GO:0000272|GO:0016161
Rops2g00421 558 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 125 139 IPR001554 GO:0000272|GO:0016161
Rops2g00421 558 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 146 164 IPR001554 GO:0000272|GO:0016161
Rops2g00421 558 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 408 431 IPR001554 GO:0000272|GO:0016161
Rops2g00421 558 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 168 189 IPR001554 GO:0000272|GO:0016161
Rops2g00421 558 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 260 282 IPR001554 GO:0000272|GO:0016161
Rops2g00421 558 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 390 401 IPR001554 GO:0000272|GO:0016161
Rops2g00421 558 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 373 389 IPR001554 GO:0000272|GO:0016161
Rops2g00421 558 SUPERFAMILY (Trans)glycosidases 89 548 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00421 Rops-Chr2 6190350 6193861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00421 76 524 Glycoside Hydrolase AT4G17090 49.558 3.99e-153 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00421 K01177 - gmx:100805981 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00421 2 6190350 6193861 Rops2g00421 2 6190350 6193861 ECH