Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00202 ATGAGGTGTTCTTCTTCGGAGACGATCAACATCGCTGCCAGTACTCAGAAACTCGATGTCGATAATCGAATTGCACTCCGCTTCTACTACAGGATCGCTGATAATATCCTCAAACAGGCTGATATCTTTCGTGCAGAGAAAAATATTGTTGATCTATATATCATGCTCTTAAGATTTTCTAGTTTGGTCTCTGAGACAATACCACGTCACCGAGATTACAGAACATCTCCACAAAGCAAGAAAGAATCATTAAGAAAGAAATTGTTAAATTCTGTGAATGAACTTGAGAAGTTGAAACCACTGGTACAACAGAAGATCAATGAGTTTAACAGCAAACAAGCATACCATCGCAACGGGTGGGAAAAATGTCATTCAAATAATTTGACGGATTTTTCTTCAGTGAAAAAGCAAACTTTGGCCAGATATGATCAGATAAAGGCAGTCAGACCAACCAATGGAGAGTTTGTCTACCGAGGATCAAGGGGCCAGCAGTTTTCTTATGTAAGGCCTGTGGAAGAGAATATGAAAAGACTATCTCTAACTTTCCCACGTCCCAAGGAAGAAACTCTCTCCAGACATTCTATTCTAGGTCCGAATGGGCTTAAAGGGCAGTGGCGACCACCTACCAGCGATAAAGGGGTCAGGTATCCAACCCTCATAGATCTCTCTCCAGTTGAAATACCAAGCCTTCAACAATCACCGGGAGATGGATCTCTGAATAACAAAGATAATAGCATTTCAGAACACATTAAATCAGATTTAGGATCAATTCTTACACAGAGTGAGGACTGCCAGGCCCAGCATACTGATGAAGCTCCTTCTCTTATCTCTTTTGAAGCAACAGAAATCCCTGCTCAAATAGAAGTTATCAGGCAGCCTTCTCCTCCACCTGTGCTTGCTGAAGTACAAGATTTGGTTCCTGCAGTATCACCTCATGTTGATGAGGCAGGATGCAGGACAGAGACTCCATCATCAGATATTCGTGCTGAGTCTCCTCTACAACTACACATTTCAACTGCTATGATGGAGAATTTTATGAGGCTTGCCAAGTCAAATACTGACAAAAATTTAGAGACTTGTGGTATCCTTGCAGGTTTGCTTAAAAACAGAAAATTTTATGTTACGGCTCTAATAATCCCGAAGCAGGAGTCAACATCAAGTTCTGTCCAAGCTACACATGAAGAGGAAATATTTGAAGTACAGGATAAGCGATCTCTTTTCCCCCTTGGGTGGATCCATACACATCCTACACAATCTTGTTTCATGTCATCAATTGATGTACACACTCATTACTCATATCAGATTATGCTGCCAGAAGCTGTTGCAATAGTCATGGCACCAAAAGACAGTTCAAGAACCCATGGCATTTTTCGGTTGACAACCCCTGGTGGCATGTCGGTCATCAGACAATGCCAGCAACGTGGCTTTCATCCTCATGATCCACCTCCGGATGGTGGTCCCATTTATGATACATGTACAGATGTTTACATCAACCCAGATTTAAAATTTGATGTCATTGATCTTCGATGA 1530 0.4163 MRCSSSETINIAASTQKLDVDNRIALRFYYRIADNILKQADIFRAEKNIVDLYIMLLRFSSLVSETIPRHRDYRTSPQSKKESLRKKLLNSVNELEKLKPLVQQKINEFNSKQAYHRNGWEKCHSNNLTDFSSVKKQTLARYDQIKAVRPTNGEFVYRGSRGQQFSYVRPVEENMKRLSLTFPRPKEETLSRHSILGPNGLKGQWRPPTSDKGVRYPTLIDLSPVEIPSLQQSPGDGSLNNKDNSISEHIKSDLGSILTQSEDCQAQHTDEAPSLISFEATEIPAQIEVIRQPSPPPVLAEVQDLVPAVSPHVDEAGCRTETPSSDIRAESPLQLHISTAMMENFMRLAKSNTDKNLETCGILAGLLKNRKFYVTALIIPKQESTSSSVQATHEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPKDSSRTHGIFRLTTPGGMSVIRQCQQRGFHPHDPPPDGGPIYDTCTDVYINPDLKFDVIDLR* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00202 509 ProSiteProfiles MPN domain profile. 335 465 IPR037518 -
Rops2g00202 509 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 332 438 IPR000555 GO:0005515|GO:0008233|GO:0008237
Rops2g00202 509 SUPERFAMILY JAB1/MPN domain 334 465 - -
Rops2g00202 509 MobiDBLite consensus disorder prediction 184 216 - -
Rops2g00202 509 Gene3D - 4 145 - -
Rops2g00202 509 FunFam AMSH-like ubiquitin thioesterase 3 320 509 - -
Rops2g00202 509 FunFam AMSH-like ubiquitin thioesterase 3 5 121 - -
Rops2g00202 509 SUPERFAMILY USP8 N-terminal domain-like 23 116 - -
Rops2g00202 509 Pfam USP8 dimerisation domain 10 100 IPR015063 -
Rops2g00202 509 Gene3D Cytidine Deaminase, domain 2 318 509 - -
Rops2g00202 509 PANTHER AMSH-LIKE PROTEASE 5 509 - -
Rops2g00202 509 CDD MPN_AMSH_like 334 509 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Rops2g00202 509 MobiDBLite consensus disorder prediction 227 246 - -
Rops2g00202 509 SMART pad1_6 334 462 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00202 Rops-Chr2 3058408 3066094 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00202 K11866 - gmx:100800636 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00202 2 3058408 3066094 Rops2g00202 2 3058408 3066094 ECH