Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00104 ATGGGGAGCCCTGGATTGAGCAACCGCAATAATGGGCAGCAGCACCGGTTAGGAATAACAGAACCCATCTCATTGGGTGGACCAACTGAATATGATGTGATCAAGACCCGGGAACTTGAGAAGTACTTGCAAGATGCTGGCTTGTATGAGAATCAGCAGGAGGCAGTTAGTAGGGAGGAAGTGCTTGGAAGGCTAGATCAGATTGTGAAGATTTGGGTCAAAACCATTAGCCGTGCAAAGGGACTTAACGAACAACTGGTGCAAGAAGCAAATGCCAAGATTTTTACTTTTGGCTCCTATCGGCTAGGGGTGCATGGCCCTGGAGCAGATATAGACACTCTTTGTGTGGGACCGAGACATGCATCCAGAGAAGAAGATTTCTTTGGTGAGCTACATAATATGCTATCCAAGATGCCAGAAGTAACAGACTTGCACCCTGTGCCTGATGCTTATGTTCCAGTGATGAGGTTCAAATTCAATGGTGTTTCTATAGATCTCCTCTATGCTAAATTATCTTTGTGGGTTATTCCTGAAGACTTAGATATATCACAGGAGTCCATATTACAAAATGTAGATGAACAAACTGTTCGTAGTCTTAATGGTTGTAGAGTGACTGATCAAATCTTGCGTTTGGTTCCAAATATTCAGAATTTTCGCACGACATTGAGATGCATGAGGTTATGGGCAAAATGTCGTGGTGTTTATTCAAATGTCGCAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTTGTCGCTCGAATATGCCAGCTATTTCCTAATGCACTGCCTAATATGCTAGTGTCTAGATTCTATAGGGTATATACTCAGTGGCGTTGGCCAAATCCAGTAATGCTTTGTGCTATTGAAGAAGGATCTCTTGGCCTTCAAATTTGGGATCCTAGAAGATATCCAAAGGATAGATTCCATCTGATGCCGATAATTACTCCTGCTTATCCGTGCATGAATTCTAGCTATAATGTGTCGTCAAGTACATTGCGCATTATGACAGAGGAGTTTCAGAGGGGAAACGAAATATGTGAGGCTATGGAGGCTAACAAGGCTGATTGGGATACTCTTTTTGAACCTTATCCCTTTTTTGAAGCTTATAAGAATTATTTGCAGATAGACATTTCAGCGGAGAATGCTGATGATCTTAGAAAATGGAAAGGCTGGGTTGAGTCTCGCCTGCGCCAGTTGACATTGAAGATTGAGAGGCACACCTATGGCATGCTTCAGTGTCATCCACATCCTGGTGACTTTTCAGACAAATCTAGACCTTTCCACTGCTCTTACTTCATGGGTCTGCAACGTAAGCAAGGAGTTCCTGTCAATGAAGGTGAACAATTTGATATAAGATTAACCGTTGAAGAATTTAAGCATTCTGTCAACATGTACACTCTATGGAAACATGGAATGGATATCCATGTCTCCCATGTGAAACGCCGTAATATACCTAACTTTGTATTTCCTGGTGGTGTTCGACCTTCCCGCCCATCTAAAGTAACCTGGGATAGTAAGCGAAGTTCAGAATTAAGAATTTCAGGCCATGGTCAAGCAGAAAAGTCTCAAGAAGATAGGAAGAGAAAGCAAGCAGAGGATAGTGTGGATGAGTCAAGAAATTCCAAGTCCTTTGCATCTTTGCCTCTCTCCAGCAGGGAAGTTCATGAAGATAGAAATCCTATTAGCACTGCTAGTTCTTGCTTTGTGAAATGTGATGACATAGAAGTCAACGGTATGAGTGAAGAAAAGAGTGAGAAACCTGATTTTAAATCTTCAGGGGAGTGTCCTTCTAGGGATAGAGAGACCAATGAATCAGCGAGAAGCAACTCACTAGTCAACCCTATACTTAATGCTACTGATACTTCTAGCTCTAAAGAAGCAGAAAAGCTTGCCATCGAGAAGATTATGCATGGTCCATATGATGCACATCAAGCCTTTCCTGAAGAACCTGATGAGCTTGAAGATGATCTTGAGTATAGAAATCAAGGCAAAGATTTTGGTGGGAACATGAAAAATTGCCACTTGGACTCTTCAAACTCAAATTCTGCAGTAGCAGCAGAACCAGTTATTTCTGAAAAGGAAACCACTTGTTCAGCTAATTTATACTCTAATGGGGGCTTGGAGGAGCTTGAGCCTGCTGAACTGACAGCACCATTGTTTAGTGGGACTCCTGCACCTGTGCCCCAGCGGAAGCCCCTTATCAGGTTGAACTTCACCTCCTTGGGGAAAGCTGCTGACAAAAATTCCTTCCTAGTACCAAACATAGCTATGGGGAAGGATCACCTGGAATATGTGTTGGTGCCTTTGGGTCTGTTGGTGTTCTTGATATACCATGTTTGGCTTCTTTTCACTATATGGCGCAACCCTCTTGGAACTGTCATTGGCCTAAACGCTGAGTCTCGTCATCAATGGGTTCTTTGCATGATGAGTGATCCCTTAAAGAATGGAGTTTTGGCTGTTCAAACTATTCGCAACAATATCATGGCGTCTACTCTTCTTGCTACAACAGCAATCACACTTAGTTCCCTCATTGGTATTTTTGCTAGCAATCCGTGGAATTCTGATGAAATGGCTTCCATACTTAACAGTAGTTCATCAATCAAAAGTATTTCTATCACCATCTGCTTCCTTGTTGCATTTTTATGCAATGTGCAGTCTATAAGATATTATGCCCATGTCAGCTTCTTAATCACCGCACCAACAGTCAGAGACAAAAGGGAGTATATGGAATATATTGCAAAGACCTTGAATCGTGGAAGTCATTCTTGGTCTCTTGGATTGCGAGCATTTTATTTGTCATTTCCTCTCTTCCTCTGGATTTATGGGCCCATTCCCATGTTTGCTTGTTGCTGCTTGACATCATTGATCTTGTACTTCTTGGATACAACAGCTAGAATCACAAGGGATCTTCATAGTGACTCATTCAAGAAGGAGAGGAGAACTCATGATGTAGAATCTGCAGAGGAGCCTGATTATTATGCTTTACCTGGTAACAATTTGTCTCAAAACACAGGTGAGGTGGGTCATGTATGA 3033 0.4224 MGSPGLSNRNNGQQHRLGITEPISLGGPTEYDVIKTRELEKYLQDAGLYENQQEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHASREEDFFGELHNMLSKMPEVTDLHPVPDAYVPVMRFKFNGVSIDLLYAKLSLWVIPEDLDISQESILQNVDEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRLWAKCRGVYSNVAGFLGGINWALLVARICQLFPNALPNMLVSRFYRVYTQWRWPNPVMLCAIEEGSLGLQIWDPRRYPKDRFHLMPIITPAYPCMNSSYNVSSSTLRIMTEEFQRGNEICEAMEANKADWDTLFEPYPFFEAYKNYLQIDISAENADDLRKWKGWVESRLRQLTLKIERHTYGMLQCHPHPGDFSDKSRPFHCSYFMGLQRKQGVPVNEGEQFDIRLTVEEFKHSVNMYTLWKHGMDIHVSHVKRRNIPNFVFPGGVRPSRPSKVTWDSKRSSELRISGHGQAEKSQEDRKRKQAEDSVDESRNSKSFASLPLSSREVHEDRNPISTASSCFVKCDDIEVNGMSEEKSEKPDFKSSGECPSRDRETNESARSNSLVNPILNATDTSSSKEAEKLAIEKIMHGPYDAHQAFPEEPDELEDDLEYRNQGKDFGGNMKNCHLDSSNSNSAVAAEPVISEKETTCSANLYSNGGLEELEPAELTAPLFSGTPAPVPQRKPLIRLNFTSLGKAADKNSFLVPNIAMGKDHLEYVLVPLGLLVFLIYHVWLLFTIWRNPLGTVIGLNAESRHQWVLCMMSDPLKNGVLAVQTIRNNIMASTLLATTAITLSSLIGIFASNPWNSDEMASILNSSSSIKSISITICFLVAFLCNVQSIRYYAHVSFLITAPTVRDKREYMEYIAKTLNRGSHSWSLGLRAFYLSFPLFLWIYGPIPMFACCCLTSLILYFLDTTARITRDLHSDSFKKERRTHDVESAEEPDYYALPGNNLSQNTGEVGHV* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00104 1010 Pfam Nucleotidyltransferase domain 83 167 IPR002934 GO:0016779
Rops2g00104 1010 Gene3D Poly(A) polymerase predicted RNA binding domain 364 479 - -
Rops2g00104 1010 Pfam Poly(A) polymerase central domain 18 362 IPR007012 GO:0043631|GO:1990817
Rops2g00104 1010 Pfam Protein of unknown function, DUF599 765 964 IPR006747 -
Rops2g00104 1010 MobiDBLite consensus disorder prediction 579 613 - -
Rops2g00104 1010 SUPERFAMILY Nucleotidyltransferase 18 211 IPR043519 -
Rops2g00104 1010 MobiDBLite consensus disorder prediction 996 1010 - -
Rops2g00104 1010 FunFam Poly(A) polymerase alpha, putative 50 206 - -
Rops2g00104 1010 FunFam Nuclear poly(A) polymerase 4 364 479 - -
Rops2g00104 1010 MobiDBLite consensus disorder prediction 1 18 - -
Rops2g00104 1010 Pfam Poly(A) polymerase predicted RNA binding domain 365 423 IPR007010 GO:0003723|GO:0043631
Rops2g00104 1010 Pfam Poly(A) polymerase predicted RNA binding domain 423 496 IPR007010 GO:0003723|GO:0043631
Rops2g00104 1010 MobiDBLite consensus disorder prediction 1 23 - -
Rops2g00104 1010 Gene3D Beta Polymerase, domain 2 50 206 IPR043519 -
Rops2g00104 1010 Gene3D - 18 360 - -
Rops2g00104 1010 FunFam Putative poly(A) polymerase gamma 180 360 - -
Rops2g00104 1010 MobiDBLite consensus disorder prediction 487 559 - -
Rops2g00104 1010 MobiDBLite consensus disorder prediction 579 605 - -
Rops2g00104 1010 MobiDBLite consensus disorder prediction 500 539 - -
Rops2g00104 1010 SUPERFAMILY PAP/OAS1 substrate-binding domain 213 362 - -
Rops2g00104 1010 MobiDBLite consensus disorder prediction 981 1010 - -
Rops2g00104 1010 CDD NT_PAP_TUTase 58 212 - -
Rops2g00104 1010 PANTHER POLY A POLYMERASE 10 540 - -
Rops2g00104 1010 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 489 IPR011068 GO:0003723|GO:0016779|GO:0031123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00104 Rops-Chr2 1596510 1606808 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00104 K14376 - gmx:100816915 1204.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00104 2 1596510 1606808 Rops2g00104 2 1596510 1606808 ECH