Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00098 ATGGCGGCAATTGCAGCAGCTCCACAACATCGATCTTCTAAAACGGAATCCTATGTCGACAACAAACGCAAGGAAGACATCCGTCACGCCAACATCATCGCCGCACGTTCGGTGGCCAACGCCGTCCGAACCAGTCTCGGCCCCAAGGGAATGGACAAGATGATCTCCACTTCCTCCGACGAAGTCATCATCACCAACGACGGCGCCACCATCCTCAACAAGATGCAAGTCCTTCAACCCGCCGCCAAGATGCTCGTCGAACTCTCCAAGTCACAAGACTCCGCCGCCGGTGACGGAACAACCACCGTCGTCGTCATCGCCGGTGCACTCCTGGAGAAGTGCCTCCTCCTCCTCTCCCACGGCATTCACCCCACCGTCATCTCCGATTCCCTCCACAAAGCCTCCGTCAAAGCCGTCGACGTCCTCACAGCCATGGCCGTCCCCGTCGAGCTCTCCGATCGCGATTCCCTCGTCAAATCCGCCAGCACTTCGCTCAACAGCAAGGTTGTTAGCCAATATTCCACGCTGCTCGCTCCGCTCGCCGTCGACGCCGTGCTCTCAGTCGTGGACCCAGAGAAGCCTTACATGGTCGATCTCCGTGACATCAAGATCGTGAAGAAGCTCGGAGGGACCGTGGATGACACTGAGCTCGTGAAGGGATTGGTGTTTGATAAGAAAGTGAGCCATGCTGCTGGTGGACCCACACGAATGGAGAATGCAAAGATTGCTGTGATTCAGTTCCAGATTTCACCTCCGAAAACCGATATTGAGCAGAGTATTGTGGTGAGTGATTATTCTCAAATGGATAGGATTTTGAAGGAAGAGAGAAGTTATATTCTAGGAATGATTAAGAAGATTAAGGCAACTGGTTGTAATGTGTTGTTGATTCAGAAGAGTATTCTTAGAGATGCTGTTACTGATTTGTCTTTGCATTACCTTGCAAAAGCTAAGATTTTGGTGATCAAGGATGTTGAAAGAGATGAGATTGAGTTCATTACCAAGACTCTGAATTGTTTGCCCATTGCAAATATTGAACATTTCCGAGCTGAGAAGTTGGGTCATGCTGATCTTGTGGAGGAGGTTTCTCTTGGGGATGGCAAGATTGTGAAGATTTCTGGGATTAAGGACATGGGAAAGACCACGACTGTCCTTGTCCGTGGATCTAACCAGCTTGTTATTGAGGAAGCTGAGAGGAGTCTTCATGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCCAAGAGGTTTCTGATTGCTGGTGGTGGTGCACCGGAGATAGAGCTGTCGAGGCAATTGGGTGCCTGGGCTAAGGTGTTGCATGGGATGGAGGGTTACTGCATTAGAGCCTTTGCTGAGGCACTTGAAGTCATTCCTTATACTCTGGCTGAGAATGCGGGTTTGAACCCCATTGTTATTGTTACTGAGCTCAGGAATCGTCATGCTCAGGGTGAGATAAATGCTGGAATCAATGTGAGGAAGGGTCAGATTACGAACATCCTAGAGGAGAATGTGGTGCAGCCACTGCTAGTGAGCACAAGTGCTATCAGCTTAGCAACAGAGTGTGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG 1605 0.4966 MAAIAAAPQHRSSKTESYVDNKRKEDIRHANIIAARSVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEKCLLLLSHGIHPTVISDSLHKASVKAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVVDPEKPYMVDLRDIKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGHADLVEEVSLGDGKIVKISGIKDMGKTTTVLVRGSNQLVIEEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCIRAFAEALEVIPYTLAENAGLNPIVIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAISLATECVRMILKIDDIVTVR* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00098 534 FunFam T-complex protein 1 subunit delta 219 377 - -
Rops2g00098 534 ProSitePatterns Chaperonins TCP-1 signature 3. 92 100 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Rops2g00098 534 ProSitePatterns Chaperonins TCP-1 signature 1. 43 55 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Rops2g00098 534 PANTHER CHAPERONIN 21 531 IPR017998 GO:0140662
Rops2g00098 534 SUPERFAMILY GroEL-intermediate domain like 151 412 IPR027410 -
Rops2g00098 534 Gene3D - 148 414 IPR027410 -
Rops2g00098 534 NCBIfam thermosome subunit beta 23 532 - -
Rops2g00098 534 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g00098 534 Pfam TCP-1/cpn60 chaperonin family 38 532 IPR002423 GO:0005524
Rops2g00098 534 SUPERFAMILY GroEL apical domain-like 214 387 IPR027409 -
Rops2g00098 534 Gene3D GroEL 219 378 IPR027409 -
Rops2g00098 534 Gene3D - 35 531 IPR027413 -
Rops2g00098 534 CDD TCP1_delta 20 533 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Rops2g00098 534 NCBIfam T-complex protein 1 subunit delta 20 533 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Rops2g00098 534 SUPERFAMILY GroEL equatorial domain-like 21 532 IPR027413 -
Rops2g00098 534 PRINTS Tailless complex polypeptide 1 (chaperone) signature 92 111 IPR017998 GO:0140662
Rops2g00098 534 PRINTS Tailless complex polypeptide 1 (chaperone) signature 62 80 IPR017998 GO:0140662
Rops2g00098 534 PRINTS Tailless complex polypeptide 1 (chaperone) signature 40 56 IPR017998 GO:0140662
Rops2g00098 534 PRINTS Tailless complex polypeptide 1 (chaperone) signature 416 428 IPR017998 GO:0140662
Rops2g00098 534 PRINTS Tailless complex polypeptide 1 (chaperone) signature 382 404 IPR017998 GO:0140662
Rops2g00098 534 NCBIfam thermosome subunit alpha 22 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00098 Rops-Chr2 1512988 1514883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00098 210 428 EF-hand Containing Proteins AT3G14270 23.504 2.14e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00098 K09496 - gmx:100786888 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00098 2 1512988 1514883 Rops2g00098 2 1512988 1514883 ECH