Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00095 ATGGCGGTGCCATGTCGCTCACGCTTATTATTTCATGGCTACTTCAGATTCAGAACCGTTTCAACTCCTTTCACCGCCACCATGTCACTCAGGTTCACTCCTCTCAGACCAACACCTTCTCTTTCCTCCATTTCTACCACGATAACCCTTCGCCCTCGCCCTCGCCTTTCGTCTTCCTCAGCACCACTTGACATTGATTGGAACCCTAGACTTAGGCACAGGACCCTGGCTCTCCCCTTCTTGCATCAACAGAGCTCCACTTATGGTCGTTTTGCCTATCATGACGAGTCTAGTGATGATTCCGATGTTGAATTTGCCTCTCATTCTCAATCTCATCAACAACAGTTGGGTAATTCAACTCTCGAAAACATTGATGAGTGGAGATGGAAACTGACTATGCTTCTTCGCAATAAAGACGAGCAAGAAGTTGTGACCAGGGAGAAAAAGGACCGGCGTGACTTTGAGCAACTTTCAACTCTAGCTACTCGGATGGGTTTATACAGCCGGCTATATGCAAAAGTCATTGTCTTTAGTAAGTCACCTTTGCCAAATTACCGCCCTGATCTGGATGATAAGCGTCCACAAAGAGAGGTAAGCTTACCGTTTGGTGTTCATAGAGAAGTAGACACTCATCTCCTCGCCCATCTTTCACATAAGGCTGCAAACAGAATAGGTTCTTTGGATGATTCATTGCATAGATCAAGTGATGCTAGAAGCATTCTTGCCGATGAAGGAATTTATGAGCAGCCGGAGCCCATGAACCATAATAGTGTTCTCAAGGAGAAAATCCTTCGACGAAGAAGTTTGCAACTGCGTCATCAGCAACAAGATTGGCAGGAGTGTCCTGAAGGGCAAAAGATGCTTGAATTTCGTAGAAGTCTTCCTGCATTCAAAGAGAAGGATGCATTTTTGAAAGTCATTTCAGAGAATCAGGTCCTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGATCGAAGCTGCACGTGGAGCTGTATGTAACATAATTTGTACTCAGCCTAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAGAAATTGGGAGAATCTGTTGGTTACAAAGTTCGTCTAGAGGGTATGAAAGGGAGGGATACTCGTCTTCTTTTTTGCACCACAGGCGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTAATTGTTCTGAAGGATCTTCTCCCTCGTCGTCCTGATTTGAGGTTAATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCCTACTTTGATGGTGCACCAACTATGCATATCCCTGGTTTTACATTTCCTGTTCGAGTGCATTTTCTTGAGGATATTCTGGAAAGGACTGGATATCGGTTGACTCCTTATAATCAAATTGATGACTATGGTCAAGAAAAAACATGGAAAATGCAGAAACAAGCTCAAGCTTTCAGAAAAAGAAAGAGCCAAATTGCTTCTGCTGTTGAGGATGCATTAGAGGTTGCAAACTTTAAGGGGTATAGCCTACGCATTCGGGAGTCATTATCGTGTTGGTGCCCTGACTCGGTTGGTTTTAACCTTATTGAACATGTGCTTTGCCACATTGTTAAGAATGAAAGGCCAGGTGCTGTTTTGGTTTTTATGACTGGTTGGGACGATATAAACTCTTTGAAGGATCAGCTCCAAGCTCATCCTTTATTGGGTGATCAGAGCCGAGTATTGCTTCTTGCATGCCATGGTTCTATGGCCAGCGCTGAGCAGAGGTTGATATTTGAACATCCTGAAGGAGGGGTGAGGAAAATTGTTCTGGCTACTAATATGGCAGAGACTAGTATTACCATCAATGACGTTGTCTTTGTGGTTGATTGTGGAAAAGCAAAAGAGACATCATATGATGCATTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTGCTGCCCGGCAGAGAAAAGGAAGGGCTGGTCGTGTTCAATCTGGTGAATGCTACCATCTTTATCCCAGATGCGTTTATGATGCTTTTGCTGATTATCAGTTGCCAGAGCTTTTAAGAACACCTTTGCAGTCCTTATGTCTGCAAATCAAAAGTCTACAACTTGGAAGCATCTCTGAATTTTTATCTAGAGCTCTGCAGCCACCAGAGCCTCTATCGGTTCAAAATGCTGTTGAATATTTGAAGATTATTGGAGCCTTAGATGAGAACGAAAATTTGACAGTTCTAGGGCGCAAGTTGTCAATCCTTCCTGTAGAACCCAAACTTGGCAAAATGCTCATTTTGGGAGCTATCTTCAACTGTTTGGACCCCATATTGACTGTTGTTGCTGGGCTTAGTGTGAGAGATCCATTTGTTATGCCGTCTGACAAGAAGGATCTTGCAGAGTCTGCCAAGGCCCAATTTGCTGCTCGTGACTATAGTGATCATCTTGCACTTGTCCGGGCTTATGAGGGTTGGAAAGATGCTGAAGCTCAGCAAGCTGGTTACGAGTACTGTTGGCGAAATTTTCTTTCTTCTCAAACACTTAGGGCAATCGACTCTCTTCGAAAGCAATTCTTTTACTTGCTCAAAGATATTGGTCTGGTTGATAACAATTCTGAAACCTACAATACATGGAGTCAGGAGGAGTATCTAGTCCGAGCAGTCGTCTGTGCGGGTTTGTTTCCCGGAATATCCTCTGTTGTGAATAAAGATAAGTCAATAGCACTGAAAACAATGGAGGATGGTCAAGTTCTTCTGTATGGTAACTCTGTAAATGCTGGTGTACCCAAAATTCCATACCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTATATCTGATTCCATGCTGCTCTTATTTGGTGGGAACATATCCAGAGGCGGACTGGATGGTCACCTGAAAATGTTGGGAGGGTATCTGGAATTTTTCATGAAACCAGAATTAGCCAAGACTTACTTAAGTTTGAAGAGGGAAGTGGAGGAACTTATACAGAAAAAACTTCTGGATCCCATGTTGGATACACAATCACATAAAGAGCTTCTTTCAGCTGTTAGATTGTTGGTATCAGAGGACCATTGTGATGGCAGATTTGTCTTTGGTCGCCAGGTCCTACCACAGTTAAAGAAAGAACCAAAATCCAATAGTGGTAATGGAGCCGGGGCTGATAATTCTAAAAATGAGCTTCAGACATTCCTTAACAGGGCTGGACATGAATCACCAACTTACAAAACAAGGCAACTGAAAAACAACCAATTCCGTTCTACTGTCATATTCAATGGCTTGAATTTTGTTGGCCAGCCATCCAGCAGCAAAAAACTAGCAGAAAAAGCTGCTGCTGCTGAGGCCATTCTATGGTTAAAAGGGGATACCCATTCATCTGGTGATATTGACCATGCGTCTGTGCTTTTGAAAAAGAGCAACAAGAAAAGGTCATACACTGAGGAGGAACTTGTCTGTGGTGAAGGCCATGATGCAATAGATTCAAGAATCTTTAGAGTTATAATTTCAACAGCGGGTGTACAGAGCTATTAG 3645 0.4255 MAVPCRSRLLFHGYFRFRTVSTPFTATMSLRFTPLRPTPSLSSISTTITLRPRPRLSSSSAPLDIDWNPRLRHRTLALPFLHQQSSTYGRFAYHDESSDDSDVEFASHSQSHQQQLGNSTLENIDEWRWKLTMLLRNKDEQEVVTREKKDRRDFEQLSTLATRMGLYSRLYAKVIVFSKSPLPNYRPDLDDKRPQREVSLPFGVHREVDTHLLAHLSHKAANRIGSLDDSLHRSSDARSILADEGIYEQPEPMNHNSVLKEKILRRRSLQLRHQQQDWQECPEGQKMLEFRRSLPAFKEKDAFLKVISENQVLVVSGETGCGKTTQLPQYILESEIEAARGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELFSSYFDGAPTMHIPGFTFPVRVHFLEDILERTGYRLTPYNQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVEDALEVANFKGYSLRIRESLSCWCPDSVGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQAHPLLGDQSRVLLLACHGSMASAEQRLIFEHPEGGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGRVQSGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVQNAVEYLKIIGALDENENLTVLGRKLSILPVEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFVMPSDKKDLAESAKAQFAARDYSDHLALVRAYEGWKDAEAQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVDNNSETYNTWSQEEYLVRAVVCAGLFPGISSVVNKDKSIALKTMEDGQVLLYGNSVNAGVPKIPYPWLVFNEKVKVNSVFLRDSTGISDSMLLLFGGNISRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKREVEELIQKKLLDPMLDTQSHKELLSAVRLLVSEDHCDGRFVFGRQVLPQLKKEPKSNSGNGAGADNSKNELQTFLNRAGHESPTYKTRQLKNNQFRSTVIFNGLNFVGQPSSSKKLAEKAAAAEAILWLKGDTHSSGDIDHASVLLKKSNKKRSYTEEELVCGEGHDAIDSRIFRVIISTAGVQSY* 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00095 1214 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 913 995 IPR011709 -
Rops2g00095 1214 Pfam DEAD/DEAH box helicase 304 455 IPR011545 GO:0003676|GO:0005524
Rops2g00095 1214 Gene3D - 247 472 IPR027417 -
Rops2g00095 1214 FunFam Putative ATP-dependent RNA helicase DHX36 736 841 - -
Rops2g00095 1214 Gene3D - 736 838 - -
Rops2g00095 1214 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 304 471 IPR014001 -
Rops2g00095 1214 Gene3D - 1080 1162 - -
Rops2g00095 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 890 IPR027417 -
Rops2g00095 1214 PANTHER ATP-DEPENDENT RNA HELICASE 243 1031 - -
Rops2g00095 1214 FunFam DExH-box ATP-dependent RNA helicase DExH3 556 712 - -
Rops2g00095 1214 Pfam Double-stranded RNA binding motif 1095 1157 IPR014720 -
Rops2g00095 1214 SMART DRBM_3 1095 1158 IPR014720 -
Rops2g00095 1214 SMART ultradead3 292 480 IPR014001 -
Rops2g00095 1214 FunFam DExH-box ATP-dependent RNA helicase DExH3 247 472 - -
Rops2g00095 1214 CDD DEXHc_RHA-like 310 470 - -
Rops2g00095 1214 SMART helicmild6 588 694 IPR001650 -
Rops2g00095 1214 Pfam Helicase conserved C-terminal domain 562 693 IPR001650 -
Rops2g00095 1214 Pfam Helicase associated domain (HA2) 757 843 IPR007502 GO:0004386
Rops2g00095 1214 CDD SF2_C_RHA 475 702 - -
Rops2g00095 1214 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1094 1159 IPR014720 -
Rops2g00095 1214 SUPERFAMILY dsRNA-binding domain-like 1094 1161 - -
Rops2g00095 1214 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 560 734 IPR001650 -
Rops2g00095 1214 SMART ha2_5 756 847 IPR007502 GO:0004386
Rops2g00095 1214 Gene3D - 556 712 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00095 Rops-Chr2 1500562 1511671 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00095 K14442 - gmx:100791006 1950.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00095 2 1500562 1511671 Rops2g00095 2 1500562 1511671 ECH