Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00064 ATGGATGATGCATTTGATGAAGAGTGTGATTATCTGTTCAAGGCTGTTCTGATTGGAGACTCTGGAGTTGGGAAATCGAATCTGCTATCAAGGTTTGCAAAAGATGAATTCCGGTTGGATTCCAAGCCTACTATAGGAGTGGAATTTGCTTACCAGAATATCAAGGTTAGAGATAAACTCATCAAAGCTCAGATATGGGACACTGCCGGCCAAGAAAGGTTTAGAGCTATTACAAGCTCGTATTACCGAGGAGCTTTGGGGGCATTGCTAGTGTATGACATAACAAGGCGATCAAGTTATGAGAATGTAAGAAAATGGTTATTGGAGCTAAGAGAGTTTGGTGGTGAAGACATGGTGGTTATTCTGGTGGGAAACAAATCTGATCTGGATCAAACAAGAGAAGTTGAGAAGGAAGAAGGTAAAGGGTTTGCAGAGACAGAAGGGTTATGTTTCATGGAAACCTCAGCTTTGAAGAATGTTAACGTTGAGGAAGTGTTCTTAGAAATGATCACAAAGATACTTGACATCACAAGTCAGAAAAGTTTGGAAGCCAAAATGGAAGAGAAACCGATTAATCGTTTGAGTGGGAAGGAGATCCAAATAGCTGATGAAGTGACTGCAACTAAACAAGCTACTTGCTGTTCAAGATGA 651 0.4055 MDDAFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYQNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRSSYENVRKWLLELREFGGEDMVVILVGNKSDLDQTREVEKEEGKGFAETEGLCFMETSALKNVNVEEVFLEMITKILDITSQKSLEAKMEEKPINRLSGKEIQIADEVTATKQATCCSR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00064 216 SMART rab_sub_5 13 176 - -
Rops2g00064 216 FunFam ras-related protein RABA5a 5 214 - -
Rops2g00064 216 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Rops2g00064 216 Gene3D - 5 214 IPR027417 -
Rops2g00064 216 NCBIfam small GTP-binding protein domain 12 166 IPR005225 GO:0005525
Rops2g00064 216 ProSiteProfiles small GTPase Rab1 family profile. 8 214 - -
Rops2g00064 216 PANTHER DRAB11-RELATED 7 195 - -
Rops2g00064 216 SMART ras_sub_4 10 176 - -
Rops2g00064 216 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Rops2g00064 216 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Rops2g00064 216 ProSiteProfiles small GTPase Ras family profile. 7 202 IPR001806 GO:0003924|GO:0005525
Rops2g00064 216 CDD Rab11_like 10 173 - -
Rops2g00064 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 189 IPR027417 -
Rops2g00064 216 PRINTS Transforming protein P21 ras signature 116 129 - -
Rops2g00064 216 PRINTS Transforming protein P21 ras signature 13 34 - -
Rops2g00064 216 PRINTS Transforming protein P21 ras signature 36 52 - -
Rops2g00064 216 PRINTS Transforming protein P21 ras signature 54 76 - -
Rops2g00064 216 PRINTS Transforming protein P21 ras signature 151 173 - -
Rops2g00064 216 SMART ran_sub_2 18 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00064 Rops-Chr2 1094215 1097247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00064 14 177 EF-hand Containing Proteins AT5G27540 28.977 2.39e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00064 K07976 - gmx:100784107 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00064 2 1094215 1097247 Rops2g00064 2 1094215 1097247 ECH