Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00062 ATGGCTTCAATGTTGAGCCCCCTTCTCACCATCCTCTTCCTCTTCTCCTACATTCCAGTGCTCAAGGTCTCAGCAGCAGCAATAATAATGTACAACAAGTGCCCACACCCAGTTTGGCCCGGGATCCAACCCAGTGCAGGACAGCCCGTTCTGGCCCGGGGAGGCTTCAAGCTCCCACCAAACAAGGCCTACTCCCTCAACCTCCCAGCCCTCTGGTCAGGTCGCTTGTGGGGCCGACACGGTTGCGCCTTTGACGCCTCCGGCCGAGGCCGCTGCGCCACCGGTGACTGCGGCGGCTCCCTCTTCTGCAACGGCATCGGAGGAACCCCACCAGCGACCCTGGCGGAGTTCACACTTGGGAAGGAACAAGACTTCTACGACGTGAGCCTTGTTGATGGGTACAACCTACCCATCTCCATCGCTCCTTTCAAGGGATCTGGGAAGTGTGGCTACGCTGGGTGTGTGAGTGACCTCAACATGATGTGCCCTGTGGGTCTGCAGGTGCGGTCACATGATAAGAAGCGTGTGATGGCCTGCAAGAGTGCTTGTTCTGCTTTCAACTCTCCCAGGTACTGCTGCACTGGTAGCTTTGGAAGCCCACAGGCCTGCAAGCCCACCGCTTATTCCAAGATCTTCAAGACCGCATGCCCACGGGCCTACTCTTATGCCTATGATGACCCTACAAGTATTGCCACTTGCACCAACGCTAACTATTTGGTCACTTTCTGCCCTCACCACCGCCGCTAA 747 0.5716 MASMLSPLLTILFLFSYIPVLKVSAAAIIMYNKCPHPVWPGIQPSAGQPVLARGGFKLPPNKAYSLNLPALWSGRLWGRHGCAFDASGRGRCATGDCGGSLFCNGIGGTPPATLAEFTLGKEQDFYDVSLVDGYNLPISIAPFKGSGKCGYAGCVSDLNMMCPVGLQVRSHDKKRVMACKSACSAFNSPRYCCTGSFGSPQACKPTAYSKIFKTACPRAYSYAYDDPTSIATCTNANYLVTFCPHHRR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00062 248 PIRSF PR5 1 248 IPR001938 -
Rops2g00062 248 ProSitePatterns Thaumatin family signature. 88 103 IPR017949 -
Rops2g00062 248 Gene3D Thaumatin 26 244 IPR037176 -
Rops2g00062 248 SMART tha2 28 244 IPR001938 -
Rops2g00062 248 CDD TLP-PA 28 243 - -
Rops2g00062 248 ProSiteProfiles Thaumatin family profile. 25 246 IPR001938 -
Rops2g00062 248 FunFam Thaumatin-like protein 1a 26 244 - -
Rops2g00062 248 Pfam Thaumatin family 32 244 IPR001938 -
Rops2g00062 248 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Rops2g00062 248 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Rops2g00062 248 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Rops2g00062 248 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Rops2g00062 248 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Rops2g00062 248 PANTHER OS03G0233200 PROTEIN 17 244 IPR001938 -
Rops2g00062 248 SUPERFAMILY Osmotin, thaumatin-like protein 27 245 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00062 Rops-Chr2 1050494 1051797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00062 9 245 Receptor kinase-like Gene Family AT5G38280 45.306 3.31e-64 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00062 - - gmx:100784636 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00062 2 1050494 1051797 Rops2g00062 2 1050494 1051797 ECH