Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00049 ATGCCGACGGCGAACCTCTTTCTCTCTCTTCTCACATTCTCTATCCTCACCCTCTCCGTCACCGCCCGTCCCTTCGTTCTCGTCCTCTCCCAGGAAGACTTCAAGGACGACGGCCCCTCCGAACCCGACTCCGCCGCTGAATGGGACGAGTTCGGTGACTCCGACAACAAGTCCGAAGAGGATCTCGACCCATCCTCATGGCGCCCTATCTTCGAACCCTCCACCGGAGAACCCCAACCCCAATCGGAATCGGAGGCTCTCTACTACTCCGGCGTGGCGAAGCTGATGTCAGGGGACATGCGGGCAATGGAAGAAGGCGCGGGGGAGATCGAGGCGGCGGCTGAATCAGGGTACCCAGGTGCCCAATCAGTGTTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAAAGAAGCAAAGGTAAGGCTTTTCTCTATCATCACTTCGCTGCTGAGGGTGGCAATATGCAATCCAAGATGGCTCTCGCTTATACATACACGCGCCAAGATATGTTTGAGAAAGCGGTTAAGCTTTATGCTGAATTAGCAGAAGTGGCGGTTAATAGTTTTTTGATATCCAAAGACTCTCCTGTGATTGAACCTGTTAGGCTTCACAATGGAGCTGAAGAGAACAAAGAAGCTCTCAGAAAATCCAAAGGGGAAGAGGATGAGGATTTTCAGATTCTTGAATATCAAGCACAGAAAGGCAATGCTGCTGCCATGTACAAAGTTGGCCTCTTTTACTACTTTGGCCTTCGAGGATTGAGGCGTGACCATTCCAAGGCACTCTCATGGTTCTTGAAGGCTGTTGAAAAGGGAGAGCCTCGCTCTATGGAGCTTCTTGGAGAGATCTATGCTAGGGGAGCTGGTGTTGAAAGGAACTACACCAAAGCCTTTGAATGGCTTACTCTTGCATCTAAACACCACCTCTATTCTGCTTATAATGGGATGGGTTATTTATACGTCAAAGGCTATGGAGTTGACAAGAAGAATTACACTAAAGCAAAAGAATATTTTGAAAAGGCTGCTGATAATGAAGAAGTTGGTGGGCACTATAACCTGGGTGTCATGTATCTCAAGGGGATTGGAGTGAAAAGAGATGTGAGGTTGGCATGTAAGTTCTTTATAGTGGCTGCTAATCATGGTCAACCAAAGGCATTCTACCAGCTGGCAAAGATTTTCCATATTGGTGTTGGGTTCAAGAAGAATATTGCCTTGGCTACTGCCCTGTACAAACTAGTTGCAGAGCGAGGTCCATGGAGTTCTTTGTCTAGATGGGCACTGGAATCGTACTTAAAAGGTGATGTTGGCAAGGCCTTTATGTTGTATTCAAGAATGGCTCAAATGGGCTATGAGGTTGCTCAAAGTAATGCTGCTTGGATTCTTGACAAATATGGAGAACGTAGCATGTGCATGGGTGAATCTGGATTATGCACTGATGCAGAAAGGCATCAACGGGCACATTCTCTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGCATATTACTATGGTCGGGGTACTGCCAGGGATTATGACCGAGCTGCCGAGGCTTACATGCATGCCAAATCGCAGTCTAATGCACAAGCCATGTTCAATCTTGGATACATGCATGAGCATGGCCAAGGACTTCCATTTGACCTTCATCTAGCCAAGCGTTACTATGATGAAGCTCTAGAGCATGATCCTGCAGCGAAGTTGCCAGTCTCTCTGGCTCTTACTAGCTTGTGGGTTCGTAAGAACTACGCTGACAGTTTCTTGGTCCATATGATTGATTCATTGCCAGATGTCTATCCTAAGTTAGAAACTTGGGTGGAGAATGTGCTTTTGGAGGAGGGAAATGCCACAATTCTCACCCTCTTTGCATGCCTCCTAACCGTGCTATACCTCCGGGAGAGGCAAAGAAGGCAAGCTGCTGCTGTTGTAGCTGGAGAGGTCGCTCAGCCGAATCGCCCTAACGAGCTTGGTGTGCCTGCACCCATCTAG 2007 0.4818 MPTANLFLSLLTFSILTLSVTARPFVLVLSQEDFKDDGPSEPDSAAEWDEFGDSDNKSEEDLDPSSWRPIFEPSTGEPQPQSESEALYYSGVAKLMSGDMRAMEEGAGEIEAAAESGYPGAQSVLGFLWGMGLLRERSKGKAFLYHHFAAEGGNMQSKMALAYTYTRQDMFEKAVKLYAELAEVAVNSFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGMGYLYVKGYGVDKKNYTKAKEYFEKAADNEEVGGHYNLGVMYLKGIGVKRDVRLACKFFIVAANHGQPKAFYQLAKIFHIGVGFKKNIALATALYKLVAERGPWSSLSRWALESYLKGDVGKAFMLYSRMAQMGYEVAQSNAAWILDKYGERSMCMGESGLCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTARDYDRAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDEALEHDPAAKLPVSLALTSLWVRKNYADSFLVHMIDSLPDVYPKLETWVENVLLEEGNATILTLFACLLTVLYLRERQRRQAAAVVAGEVAQPNRPNELGVPAPI* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00049 668 SUPERFAMILY HCP-like 88 184 - -
Rops2g00049 668 SMART sel1 383 418 IPR006597 -
Rops2g00049 668 SMART sel1 119 154 IPR006597 -
Rops2g00049 668 SMART sel1 499 534 IPR006597 -
Rops2g00049 668 SMART sel1 274 309 IPR006597 -
Rops2g00049 668 SMART sel1 347 382 IPR006597 -
Rops2g00049 668 SMART sel1 535 570 IPR006597 -
Rops2g00049 668 SMART sel1 237 273 IPR006597 -
Rops2g00049 668 SMART sel1 310 346 IPR006597 -
Rops2g00049 668 Pfam Sel1 repeat 121 154 IPR006597 -
Rops2g00049 668 Pfam Sel1 repeat 535 569 IPR006597 -
Rops2g00049 668 Pfam Sel1 repeat 311 344 IPR006597 -
Rops2g00049 668 Pfam Sel1 repeat 432 450 IPR006597 -
Rops2g00049 668 Pfam Sel1 repeat 237 272 IPR006597 -
Rops2g00049 668 Pfam Sel1 repeat 501 523 IPR006597 -
Rops2g00049 668 Pfam Sel1 repeat 350 381 IPR006597 -
Rops2g00049 668 Pfam Sel1 repeat 275 307 IPR006597 -
Rops2g00049 668 SUPERFAMILY HCP-like 430 571 - -
Rops2g00049 668 MobiDBLite consensus disorder prediction 33 83 - -
Rops2g00049 668 Gene3D Tetratricopeptide repeat domain 55 184 IPR011990 GO:0005515
Rops2g00049 668 Gene3D Tetratricopeptide repeat domain 312 426 IPR011990 GO:0005515
Rops2g00049 668 Gene3D Tetratricopeptide repeat domain 427 587 IPR011990 GO:0005515
Rops2g00049 668 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 649 IPR044623 GO:0030433
Rops2g00049 668 MobiDBLite consensus disorder prediction 43 57 - -
Rops2g00049 668 SUPERFAMILY HCP-like 328 458 - -
Rops2g00049 668 SUPERFAMILY HCP-like 218 343 - -
Rops2g00049 668 Gene3D Tetratricopeptide repeat domain 199 311 IPR011990 GO:0005515
Rops2g00049 668 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 202 313 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00049 K14026 - gmx:100787823 1159.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00049 2 897407 902361 Rops2g00049 2 897407 902361 ECH