Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02488 ATGTCGAGAACGATAACGGGCATCCAGGGGCAACCTCTTGAGGTTACTGTGGTGTCGTGCTCCAAATTGAAGGACACAGAATGGATTTCAAGGCAAGATCCCTACGTTTGCGTTGAATATGGCAGCACCAAATTCCGAACCAGAACCTGCACAGACGGCGGAAAAAATCCGATATTTCAAGAGAAGTTCATATTTCCCCTGATTGAAGGCCTTCGCGAGCTCAATGTCCTCGTTTGGAACAGCAATACTCTCACCTTCGATGATTTCATCGGCAGCGGAAAGATTCAATTGCACAAGGTTCTCTCTCAAGGTTTTGATGACTCTTCTTGGCCCCTTCAAACTAAAACCGGCAGATACGCAGGCGAAGTAAAACTCATATTGCATTATGCAATTGCAAATCACCAGAAATTGGCCCCAAGCCATGCTCCATCAGCACCTCCCTATGTGCCAACAGCAACTCCCCCAGTCCATTCATATTCTTATTCTACACCACCTCCTACTTCCTACCCACCACCACCACCACCCTCTGCAGCCCCTTACCATCCAACACCTGCTTACCCACCAGTAGCATCGTACCCACCACCTGCCACTGCTTACCCTTCTTCAACTCCCTATCCTTCACATTCATCTTCCTATCCACCATCATCATACCCTGCACCATCTCCCTACCCCCCATCATCATACCCTCCTCCCCCTTCATATCCCCCAGCTTCAGCTTATCCACCACCTCCATATCCACCATCTGCAGGTTATCCTCCCGGAGTATACCCTCCACCGCCATACTAA 786 0.4949 MSRTITGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCVEYGSTKFRTRTCTDGGKNPIFQEKFIFPLIEGLRELNVLVWNSNTLTFDDFIGSGKIQLHKVLSQGFDDSSWPLQTKTGRYAGEVKLILHYAIANHQKLAPSHAPSAPPYVPTATPPVHSYSYSTPPPTSYPPPPPPSAAPYHPTPAYPPVASYPPPATAYPSSTPYPSHSSSYPPSSYPAPSPYPPSSYPPPPSYPPASAYPPPPYPPSAGYPPGVYPPPPY* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02488 261 Gene3D C2 domain 11 130 IPR035892 -
Rops1g02488 261 MobiDBLite consensus disorder prediction 197 230 - -
Rops1g02488 261 CDD C2 13 110 - -
Rops1g02488 261 PRINTS Proline rich extensin signature 143 164 - -
Rops1g02488 261 PRINTS Proline rich extensin signature 166 182 - -
Rops1g02488 261 PRINTS Proline rich extensin signature 183 200 - -
Rops1g02488 261 PRINTS Proline rich extensin signature 204 229 - -
Rops1g02488 261 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 129 IPR035892 -
Rops1g02488 261 SMART C2_3c 12 109 IPR000008 -
Rops1g02488 261 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Rops1g02488 261 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 7 261 - -
Rops1g02488 261 Pfam C2 domain 13 103 IPR000008 -
Rops1g02488 261 MobiDBLite consensus disorder prediction 211 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02488 Rops-Chr1 47995452 47997261 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02488 - - gmx:100776879 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02488 1 47995452 47997261 Rops1g02488 1 47995452 47997261 ECH