Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02485 ATGCTCAAAACCCTCCCTTCTGTAGGCCTCACTTACCAAACTAAGCTAGAAATCAGGAAAACTACACATGCACGAATCAAGCTGCTTCCTGGGATTGCAGCTCGGCCACTGGAGGTTAATGTCATAAATCTAAACTCTATTGCAAGAACGTCTCTGTGGACAGTGAAGCATTCAGGGCCAAGTCCTGGTGGAAAAGGTCATAAATCCAGGTCAAGGACTGAGGATGCCCGAATTCTACTACAGCGAGCCTTGAGGTCATGGAGGAGTCGTCACTTCTCCGTGACGAGGGATGACGCCAAATGGCTTACCCTGCCTCCCGTCACTGCCACTTCCACCGTGGGGCTGGGGAAGGGGAACCAGCTGTCCTCCACCTCCACCACTGCGCTCAAGTGGGTTCTTCGATGCTGCCCCAACCTACCCAAAACCCTTGTGCACAAGCTTTTTCGTCTAAGACAGGTTCGAATCGTCCCTGCTGCCACACAAGATCATAGACTCAAAAGGGTGGCAGCCAAGGATACCTTGAACTCAGGAGATCGCGTCTTTCTTCCTCATTCTGTTAAAGAAATGCCTCGACCTCACAAACCTGAGGGTCACGTCACTGCCAAGGAAATCGACTTTATCCGTAGTCTTGTTATCTATAAGGATCCTGCCACTCTTGTCCTCAACAAACCTCCAGGAATGCCTGTGCAGGGTGGCATTAATATCAAACGGAGTTTAGATGTAGTAGCTGCTGCATGTTTAAATTATGAATACTCAAAACCCCCTCGTCTGGTGCATAGACTAGACAGAGACTGTTCTGGCATTATGGTGATGGGAAGGACACAGACAAGTGCTGCAGTTCTGCATTCCATCTTCCGGGAGAAAACTTCCAGGGCTTCCGATGATATTGGCTCAGAAAAGAGAATCCTACAAAGAAGCTACTGGGCACTGGTCATTGGATGTCCTAGACGTCTAAAGGGTTTGGTTACCGCTTCACTGGGTAAGGTGGTGGTTGACAATGGAAAATCTGATCGAATAACTGTCATTGATAATCCTTCATTACCGTCATCACAACATGCAATTACAGAGTACCGAGTGATTGGATCATCATCACATGGTTACACATGGTTGAAGCTGTCCCCTTTAACTGGTAGAAAACACCAGCTTCGAGTCCACTGTGCTGAGGTGCTGGGTACACCAATAGTTGGAGACTACAAGTACGGGTGGCAAGCTCACAGGAAGTGGGGACATTTTGATTTGTCTAATGTGGAGGAGGACTCTAGTGAAGAGCTTCTTCTCAAGGAAGATGAGACACTCCCCTTTGGCCTGAATTTGAACGAGGGGAGCATCTCTGAGAAGCATCCTCGTTTACATCTTCATTGCAAGCAAATAGTGTTGCCCAACATATCTCAGGCACTGCAAAATGTGCAATCAGCTTCCAATTATGATCTTTCACAAGTGGAAGCACTTGAGTTGGTCGCTGATTTGCCTCCATACATGCAACGGAGTTGGGATGTCACGAATTCTTGA 1509 0.4778 MLKTLPSVGLTYQTKLEIRKTTHARIKLLPGIAARPLEVNVINLNSIARTSLWTVKHSGPSPGGKGHKSRSRTEDARILLQRALRSWRSRHFSVTRDDAKWLTLPPVTATSTVGLGKGNQLSSTSTTALKWVLRCCPNLPKTLVHKLFRLRQVRIVPAATQDHRLKRVAAKDTLNSGDRVFLPHSVKEMPRPHKPEGHVTAKEIDFIRSLVIYKDPATLVLNKPPGMPVQGGINIKRSLDVVAAACLNYEYSKPPRLVHRLDRDCSGIMVMGRTQTSAAVLHSIFREKTSRASDDIGSEKRILQRSYWALVIGCPRRLKGLVTASLGKVVVDNGKSDRITVIDNPSLPSSQHAITEYRVIGSSSHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNVEEDSSEELLLKEDETLPFGLNLNEGSISEKHPRLHLHCKQIVLPNISQALQNVQSASNYDLSQVEALELVADLPPYMQRSWDVTNS* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02485 502 CDD PseudoU_synth_RluA_like 219 409 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops1g02485 502 MobiDBLite consensus disorder prediction 55 74 - -
Rops1g02485 502 Gene3D Pseudouridine synthase 203 472 - -
Rops1g02485 502 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 123 499 - -
Rops1g02485 502 SUPERFAMILY Pseudouridine synthase 207 461 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops1g02485 502 Pfam RNA pseudouridylate synthase 219 387 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02485 Rops-Chr1 47964952 47970640 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02485 - - gmx:100779473 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02485 1 47964952 47970640 Rops1g02485 1 47964952 47970640 ECH