Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02474 ATGGCCATGTCTATGGGGCTCTTCTCTACTACCACTACTCTAACTCTCAGGCCTCAACTCCCTGCTTTTACTCCTTCCCCTCCTCCTACGTTGCGAGTGGTGAGAACCGTCACCTCTGCCACCGTGTCTCAGCCATCCACCGGCAAAATTCGTGGCATAATGAAGCCACGCAAAATCTCACCGGAGATGCAAGCCCTCGTTGGGCTTTCCGAGATTTCTCGAACCCAAGCACTCAAACACATTTGGGCCTACATTAAGGAAAACAATCTTCAGGACCCTGAAAACAAGAGGCTTATTCGTTGTGACGAGAAGCTGAAGAAGGTATTTGCAGGGAGAGATCAAGTTGGCATGCTTGAGATTGCTGGGTTGATTAGTCCTCACTTCCTTAAATGA 393 0.4911 MAMSMGLFSTTTTLTLRPQLPAFTPSPPPTLRVVRTVTSATVSQPSTGKIRGIMKPRKISPEMQALVGLSEISRTQALKHIWAYIKENNLQDPENKRLIRCDEKLKKVFAGRDQVGMLEIAGLISPHFLK* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02474 130 SMART swib_2 53 130 IPR019835 -
Rops1g02474 130 Gene3D SWIB/MDM2 domain 47 130 IPR036885 -
Rops1g02474 130 ProSiteProfiles SWIB/MDM2 domain profile. 52 130 IPR003121 -
Rops1g02474 130 SUPERFAMILY SWIB/MDM2 domain 47 130 IPR036885 -
Rops1g02474 130 Pfam SWIB/MDM2 domain 55 128 IPR003121 -
Rops1g02474 130 CDD SWIB-MDM2_like 57 128 - -
Rops1g02474 130 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 43 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02474 Rops-Chr1 47801878 47804330 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Rops1g02474 SWIB 3.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02474 - - lja:Lj1g3v0050930.1 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02474 1 47801878 47804330 Rops1g02474 1 47801878 47804330 ECH