Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02460 ATGGAGGGAAGCGAGAGCGATGGTGATGGTTCTCGTCCATGGCAGTCCTACCACACTGTCTACACTATCGCCAAAGCAGGAATGGAGGGGGTTGACAAGGAGAAAGTACAAAGGATAGTGTATGAAATGAGCAAAGGATCTAAATATTTTCAGAATGAGGAACGCAAGGAGGCTTTTATCAAGCAGAAAATTGACAACTTGCGACTTCAGTATGCTAAGCTTACCCAAGCAGACTTGTCCCATTATCACAAGGTTGCTGATAGAAGAATTCTTGAGCTAGAAGCTTCACGTGACCTTTCAAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCAGCAGTTGAGACTTTAAGTAATCCTACATTGAAGGGCCGGCCAATGGCTGTTGGTAGCATGTCTATGATATCCACTGCTAATTATGAGGCCCGGAAATTTGGGGTTCGTGCTGCCATGCCTGGGTTCATTGCACGTAAGCTATGTCCAGAATTAATCTTTGTCCCAACTGATTTCAAGAAGTATAATTATTACAGTGATTTGACCAGAAAAGTTTTTCGGAGGTACGATCCCAATTTCATTGCTGGTAGCCTGGATGAAGCATTCCTTGATATAACTGAAGTTTGCAAAGAAAGGAATGTCAAAAGTGAAGAAATTGCTCAAGAACTCAGAGCCAGTGTTTATGAAGGGACTGGTCTCACATGTAGTGCTGGAGTGGCACCAAATCACTTACTTGCTAAGGTTTGCTCAGACATAAACAAGCCAAATGGACAGTATGTTTTGCCAAATGACCGCGTGGCTGTTATGACCTTCATTTCCTCGCTTCCTATCAGAAAGATTGGGGGCATTGGTAAGGTCACTGAACATATTTTGAAGGAAGTTTTTGGAATTAACACATGTGAGCAGATGCTGGAGAAGGGTAGCTACCTGTGTGCTCTTTTTTTGCAGTCAACAGCAGATTTTTTTTACTCTGTGGGTTTAGGTCTTGGGAAGACAGATACTCCCCAAGTAAGATATCGGAAAAGTATTAGTAATGAAAGGACATTTTCTGCCACTGAGGATGAAGCACTGTTGTATAAAAGATTGGCGGAGCTTGCTGAAATGCTGTCCACAGACATGCAAAAAGAGGGTCTGTGTGGGCGAACATTGACTCTTAAACTGAAGACTGCTTCTTTTGAGGTTCGGACTAGGGCTGTGACTTTACAAAAGTACATCTGCTCAAGTGAGGATATTTTGAAGCATGCATCAAAGTTGCTAAAAGCTGAACTTCCTATTTCAGTAAGATTGATAGGCCTTAGAGTATCTCAGTTTAATGGAGACAAGTCTGGTGCTACTTCTGATCCTACACAGAAGACCATTACCAACTTCATTACTTCAGGAGAAGCCATTAGGAATTCTAGTTCTTTTCCAGATGTTACAGATCATGACTTTGTCAGTGATACTGAAACTGATCTTTCCTTTGAAGATCGGCAGACAATTCAGGATGATTGCATAGATCCTTTTGACGTTAATCATTCATCAGATGTAGATGACCAAAGCTGCACTGTCTGGAAAAATGATGGTGCAGAGGAGGTGCAAACGTCTGGCAATGATGCTACAAGTTCTAACTGCAGTGGACGTACAGAAATGCTGGGATCAACTTCTTTCCAGGGGCCGTTTGAGGGCGTAAATGTGAATTATGGGTCTGATCTCCTGACGGATGAGAGACTTAATTCTTCTTGTCAGGAAACAACAATGTTGTGGTTGAATGACTACAAATGTTCACTCTGTGGAGTAGAACTTCCCCCAAGTTTTGTTGAGGAAAGATTAGAGCACTCTGATTTTCATCTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGGATTCACCAAACATCTGTTCTGAGTCAAAGTCGGGATCAGAAGTATCGAATCACTAGACAAGGCAAATCCAAGAAGCAAAAGTTGTCGCAGAAAGAAGTTCTGTACAGCATACCTCAACATCTGGCAGTTACTGTATAA 1995 0.419 MEGSESDGDGSRPWQSYHTVYTIAKAGMEGVDKEKVQRIVYEMSKGSKYFQNEERKEAFIKQKIDNLRLQYAKLTQADLSHYHKVADRRILELEASRDLSRIWLHVDMDAFYAAVETLSNPTLKGRPMAVGSMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYNYYSDLTRKVFRRYDPNFIAGSLDEAFLDITEVCKERNVKSEEIAQELRASVYEGTGLTCSAGVAPNHLLAKVCSDINKPNGQYVLPNDRVAVMTFISSLPIRKIGGIGKVTEHILKEVFGINTCEQMLEKGSYLCALFLQSTADFFYSVGLGLGKTDTPQVRYRKSISNERTFSATEDEALLYKRLAELAEMLSTDMQKEGLCGRTLTLKLKTASFEVRTRAVTLQKYICSSEDILKHASKLLKAELPISVRLIGLRVSQFNGDKSGATSDPTQKTITNFITSGEAIRNSSSFPDVTDHDFVSDTETDLSFEDRQTIQDDCIDPFDVNHSSDVDDQSCTVWKNDGAEEVQTSGNDATSSNCSGRTEMLGSTSFQGPFEGVNVNYGSDLLTDERLNSSCQETTMLWLNDYKCSLCGVELPPSFVEERLEHSDFHLAEKLQKEESRIHQTSVLSQSRDQKYRITRQGKSKKQKLSQKEVLYSIPQHLAVTV* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02460 664 PIRSF DNA_pol_eta 213 438 - -
Rops1g02460 664 PIRSF DNA_pol_eta 440 659 - -
Rops1g02460 664 PIRSF DNA_pol_eta 95 217 - -
Rops1g02460 664 FunFam DNA polymerase kappa subunit 163 258 - -
Rops1g02460 664 Pfam IMS family HHH motif 266 296 IPR024728 -
Rops1g02460 664 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 14 651 - -
Rops1g02460 664 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 337 434 IPR036775 GO:0003684|GO:0006281
Rops1g02460 664 FunFam DNA polymerase IV 336 443 - -
Rops1g02460 664 Gene3D - 108 258 IPR043128 -
Rops1g02460 664 FunFam DNA polymerase kappa subunit 20 110 - -
Rops1g02460 664 Gene3D - 337 443 IPR036775 GO:0003684|GO:0006281
Rops1g02460 664 Hamap DNA polymerase IV [dinB]. 100 452 IPR022880 GO:0003887
Rops1g02460 664 ProSiteProfiles UmuC domain profile. 103 283 IPR001126 GO:0006281
Rops1g02460 664 Pfam Ubiquitin-Binding Zinc Finger 583 616 IPR041298 -
Rops1g02460 664 ProSiteProfiles Zinc finger UBZ3-type profile. 579 616 IPR041298 -
Rops1g02460 664 FunFam Polymerase (DNA directed) kappa 113 165 - -
Rops1g02460 664 CDD PolY_Pol_IV_kappa 104 436 IPR022880 GO:0003887
Rops1g02460 664 Gene3D - 259 332 - -
Rops1g02460 664 Gene3D - 22 107 - -
Rops1g02460 664 Pfam impB/mucB/samB family C-terminal domain 339 440 IPR017961 GO:0003684|GO:0006281
Rops1g02460 664 SUPERFAMILY DNA/RNA polymerases 77 331 IPR043502 -
Rops1g02460 664 FunFam DNA polymerase kappa 246 332 - -
Rops1g02460 664 Pfam impB/mucB/samB family 106 250 IPR001126 GO:0006281
Rops1g02460 664 Coils Coil 50 70 - -
Rops1g02460 664 Gene3D - 120 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02460 Rops-Chr1 47667922 47673002 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02460 K03511 - gmx:100816973 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02460 1 47667922 47673002 Rops1g02460 1 47667922 47673002 ECH