Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02340 ATGGCTTCAAAACCATTCAGGGCAAGCCGATCATCTCTATCAACAATGTCTGATGTAACTGAAGGCCAGAAGCCTCCTTTACCTCCGACTGTAACCTTTGGCCGGAGAACTTCTTCAGGTCGCTATGTCAGTTACTCTAGAGATGATCTTGACAGTGAGCTAGGGAATAGTGGTGACTTCATGAATTATACCGTGCATTTACCACCAACCCCTGATAACCAACCTATGGATCCATCAATCTCACAGAAAGTTGAGGAGCAATATGTGTCAAATTCACTCTTCACAGGTGGATTCAACAGTGTTACTCGAGCCCATCTAATGGATAAGGTGATAGAATCTGAAGCAAATCATCCACAGATGGCTGGTGCAAAAGGATCTTCATGTGCAGTTCCTGGTTGTGATTCTAAAGTGATGAGTGATGAACGTGGGGCTGATATTCTTCCATGTGAGTGTGATTTTAAGATATGTAGAGATTGTTATATAGATGCAGTAAAAACCGGAGGTGGGATATGCCCAGGATGCAAGGAGCCATATAAGAATACAGAACTAGATGAAGTGGTTGTAGATAATGCACGTCCCCTTCCACTTCCTCCACCGAGTGGAATGTCTAAAATGGAGAGGAGATTGTCCTTGATGAAGTCAACAAAGTCAGCATTAATGAGGAGCCAAACTGGAGACTTCGATCATAATAGGTGGCTCTTTGAAACTAAGGGGACCTATGGCTATGGCAATGCTATATGGCCAAAGGAAGGTGGGGGTTTTGGAAATGAAAAAGAGGATGATGTTGTTGAGCCAACTGAATTGATGAACAGACCATGGAGGCCACTCACACGGAAACTGAAAATACCTGCTGCTGTTCTTAGCCCATATCGTCTTATCATTTTTATTCGTTTGGTTGTCCTGGCACTGTTCCTGGCATGGAGGATCAAACACCAAAATACTGATGCAGTCTGGCTATGGGGCATGTCTGTTGTTTGTGAGATATGGTTTGCTTTTTCCTGGGTGCTGGATCAGCTGCCCAAACTTTGCCCAGTAAATCGTTCCACAGATCTTAATGTTCTGAAGGAGAAATTTGAAACACCAACTCCTAACAATCCTACTGGGAAGTCTGATCTTCCAGGCATAGATGTCTTTGTCTCCACTGCTGATCCTGAGAAAGAACCACCTCTTGTCACTGCAAACACTATCTTGTCTATTTTAGCTGCTGATTACCCTGTTGAGAAGCTTTCTTGTTATGTTTCTGATGATGGAGGTGCACTTCTAACTTTTGAGGCAATGGCTGAAGCTGCCAGTTTCGCTAATGTATGGGTTCCCTTCTGCCGTAAACATGATATAGAGCCAAGGAATCCTGAATCGTACTTCAATTTAAAAAGAGACCCTTACAAAAACAAAGTGAAGTCAGATTTTGTCAAGGATCGTAGAAGAGTGAAGCGTGAGTATGATGAGTTCAAGGTGAGGATCAATAGTCTGCCTGACTCTATCCGTCGCCGGTCAGATGCTTATCATGCAAGAGAGGAAATCAAGGCCATGAAAGTTCAGAGACAAAACAGGGAAGATGAACCTTTAGAAACTGTAAATATTCCAAAAGCAACATGGATGGCGGATGGAACTCATTGGCCAGGGACTTGGTTGAGTCCTACATCTGAGCACTCTAAGGGTGACCACGCTGGTATAATTCAGGTGATGTTGAAACCTCCCAGTGAAGAACCTCTTCTTGGAAGTGCTGATGATACAAAGCTCATAGACATAACTGATGTTGATATCCGTCTACCTCTTCTTGTTTATGTTTCTCGAGAGAAGCGTCCAGGTTATGATCACAACAAAAAGGCTGGGGCAATGAATGCCTTGGTTCGAGCCTCAGCTATAATGTCTAATGGTCCTTTTATACTCAATCTTGATTGTGATCACTATATCTACAACTCAAAGGCAATGAGGGAAGGCATGTGCTTTATGATGGATCGTGGAGGTGACCGCATTTGTTATGTCCAGTTCCCCCAGAGGTTTGAAGGGATTGATCCCTCTGATAGATATGCTAATCATAACACTGTCTTCTTTGATGTCAATATGCGAGCCCTTGATGGACTTCAAGGGCCGGTCTATGTGGGAACTGGGTGCCTTTTCAGACGGATTGCACTTTATGGTTTTGACCCACCCCGCTCCAAAGAGCACCACCCTGGTTGCTGTAGTTGTTGCTTTGGTCGTCAGAAGAAGCATGCATCAATGGCAAGCACCCCTGAAGAGAATCGTGCACTGAGGATGGGTGATTCAGATGATGAAGAAATGAATCTATCCTTGTTCCCTAAGAAGTTTGGAAACTCAACTTTCCTCATTGACTCAATCCCAGTGGCAGAGTTCCAAGGCCGGCCACTAGCTGATCACCCTGCTGTGAAAAATGGACGGCCACCTGGTGCTCTCACCATACCTCGTGATCTTCTCGACGCATCAACTGTTGCAGAGGCCATCAGTGTCATCTCCTGTTGGTACGAGGACAAGACTGAATGGGGACAACGTGTTGGATGGATCTATGGATCTGTGACTGAGGATGTGGTCACTGGTTATAGGATGCACAATAGGGGATGGAAATCAGTTTACTGTGTGACCAAGCGTGACGCCTTCCGTGGAACTGCTCCCATCAATCTCACTGACAGGCTGCATCAGGTCCTTAGATGGGCTACTGGCTCAGTTGAAATATTCTTCTCGCGAAACAATGCCCTTCTGGCTAGCCCAAGAATGAAGCTTCTTCAAAGAATTGCATATCTCAATGTTGGAATTTACCCATTCACATCCATATTCTTAATTGTCTACTGCTTCCTTCCTGCACTATCCCTCTTCTCTGGCCAGTTCATTGTTCAAACCCTCAATGTCACATTTCTCTCTTATCTCCTGGGCATCACTCTTACTTTGTGCATGCTTGCAGTGCTTGAAATTAAGTGGTCTGGCATTGAGCTGGAAGAATGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACCAGTGCCCATCTAGCTGCTGTGCTTCAGGGTTTGCTCAAAGTCATAGCAGGGATTGAAATCTCATTCACCTTGACTTCAAAATCTGGTGGTGATGATGTAGATGATGAGTTTGCTGATCTCTATATTGTCAAATGGACCTCCCTTATGATACCACCAATAACAATCATGATGGTTAACTTAATAGCAATAGCAGTTGGAGTCAGCAGAACCATATACAGTGTCATACCACAGTGGAGCCGTCTACTAGGTGGTGTTTTCTTTAGTTTTTGGGTGTTGGCTCATCTCTACCCTTTTGCAAAAGGTTTAATGGGAAGAAGAGGAAGGACACCAACCATAGTTTTTGTATGGTCAGGTCTGATAGCAATCACAATATCTCTCCTGTGGGTGGCAATCAATCCCCCTGCTGGTAGTAGCCAAATTGGGGGTTCATTCCAGTTTCCATGA 3438 0.445 MASKPFRASRSSLSTMSDVTEGQKPPLPPTVTFGRRTSSGRYVSYSRDDLDSELGNSGDFMNYTVHLPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMAGAKGSSCAVPGCDSKVMSDERGADILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTELDEVVVDNARPLPLPPPSGMSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGGGFGNEKEDDVVEPTELMNRPWRPLTRKLKIPAAVLSPYRLIIFIRLVVLALFLAWRIKHQNTDAVWLWGMSVVCEIWFAFSWVLDQLPKLCPVNRSTDLNVLKEKFETPTPNNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRVKREYDEFKVRINSLPDSIRRRSDAYHAREEIKAMKVQRQNREDEPLETVNIPKATWMADGTHWPGTWLSPTSEHSKGDHAGIIQVMLKPPSEEPLLGSADDTKLIDITDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRSKEHHPGCCSCCFGRQKKHASMASTPEENRALRMGDSDDEEMNLSLFPKKFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRDLLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLGITLTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGSSQIGGSFQFP* 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02340 1145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 192 IPR013083 -
Rops1g02340 1145 MobiDBLite consensus disorder prediction 1 21 - -
Rops1g02340 1145 FunFam Cellulose synthase-like protein D3 111 193 - -
Rops1g02340 1145 FunFam cellulose synthase-like protein D3 580 717 - -
Rops1g02340 1145 Pfam Cellulose synthase 375 1134 IPR005150 GO:0016020|GO:0016760|GO:0030244
Rops1g02340 1145 MobiDBLite consensus disorder prediction 1 38 - -
Rops1g02340 1145 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 581 716 IPR029044 -
Rops1g02340 1145 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 274 1121 - -
Rops1g02340 1145 Pfam RING/Ubox like zinc-binding domain 130 179 - -
Rops1g02340 1145 SUPERFAMILY Nucleotide-diphospho-sugar transferases 390 716 IPR029044 -
Rops1g02340 1145 SUPERFAMILY RING/U-box 113 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02340 Rops-Chr1 45678320 45683531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02340 6 1145 Glycosyltransferase AT3G03050 85.004 0.0 2038
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02340 K20924 - gmx:100792604 2283.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02340 1 45678320 45683531 Rops1g02340 1 45678320 45683531 ECH