Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02255 ATGGCCGCAGACGAAGGAAAGGTGAGATTTGAAAAGTTCGATGGTGCGAACTTTGGCTTTTGGAAAATGCAGATAGAGGATTATCTGTATCAAAAGGGTTTGCAACAACCCCTTTCAAAGAAGCCAGAAACTATGGAGAATGACGCTTGGGAACTTCTAGACAGAAAAGCTCTCGGAGTTATCCGATTGACGCTATCCCGAAATGTTCCCTTCAACATAGTAAAAGAAAAGACCACAGCGGGTCTTATGGCTGGTCTCTCCAGTATATATGAGAAGTCATCAGCCTCAAACAAAGTTCACTTAATGAGGCGATTATTCAATCTATGGATGATGGAAAGTGCATCAACAGCTCAACATCTCAATGAACTCAATACAATTACAACCCAGTTGAGTTCAATTGGGATTGAATTTGATGAAGAAGTTTGCAGATTCGCTTCTAGAGTTGTGAGATCCCTTTTCTCTACTTCTAAGGCCTCTCGTTTTCAGTCCGAAGGGCGTGCTGCTGTAGTTTCATTCACCAGTAAAATGCCTTTTTCGGCTTCAAGCTACAAGAGTGCTGGTTCTGGAAGTGGACCTGGAGCATGGATTTCAGGGGCTCTTGCTCTTCCTGCTGCAGCTTTCATGCTCCAAGATCAGGAGGTGCACGCATCTGAGATTGCAGAGATTATATCTCGTTTTAAGCAGAAAGGATACAAACTAGTAGGAATTAAAGTATTAGTTCCTTCAAAGACATTTGCTGAGAGCCATTACCATGACTTGAAGGAAAGACCCTTCTTCAATGAGCTGTGTGAATTCCTAAGCTCTGGCCCTGTTGTTGCAATGATAGACATGCTACTTTCTTTCTGTACATGCATTGTCAATGATTTGGTTATCACAATTCTGATTGTTACCCTTACCTGCAAAAATATCATCCATGGGAGTGATGGTCCAGAGACTGCAAAGGATGAGATTAAGTTGTGGTTTAAGCCAGAGGAATTGGTTAATTATACTGGCAATGCGGAGAAGTGGATTTATGTTCCGTACGATTGCGACTCCATCTCTGTTGTTGAATTCCATCTTCGCCGAACAATGGCAGCCAAACCCCTTACAACGGAGACAATTGCGCTTACAGAGAAGAAGATGGATATGACATTAGATGATATAATCAAAATGTCTAAAAATTCAAAGACTAGGAAGCAAAGAAGTGTTCCGAACAAAAGCCAAAAGTTTTCAAACAATTTTACTCAAGATAAGTCTTCAAAGGTGCGGCGTTATATGGAATCAAGATCTTCTCTTAGACAGGGGGCTCTTGCAAAAAGAAGGTCTAATTTCCAGGTCAACCATTTTCCTGTTGCAGCTGAGGTTGCACGAAAAGCTGTTACAGCTTCTCCGCACAATAAAGTTAATAGGGTGGCTAACTGGAATAAAGCAAGATTTCGAGTTCCTGTAAGTCAGAGAAGGGCTACTAGTGGAGGTTTCGCTGGAAAGCAACCGCTGCCTAACCCTCAGAAGCAGCAGGAGAGTGTGGATATAATGCCGAAGCAAAAGCCTCAGACGATGGATTCACTGTTTGCAAACATGACAGAGCAAAGAATGAGAGATTTGTCAATGCGGAATAATGCTGTGCAGCGCAATGGAGGTGGGAATCGGAGGCTCCCATGGGGAAGAGGTCGATTTGGCAACTAA 1665 0.4276 MAADEGKVRFEKFDGANFGFWKMQIEDYLYQKGLQQPLSKKPETMENDAWELLDRKALGVIRLTLSRNVPFNIVKEKTTAGLMAGLSSIYEKSSASNKVHLMRRLFNLWMMESASTAQHLNELNTITTQLSSIGIEFDEEVCRFASRVVRSLFSTSKASRFQSEGRAAVVSFTSKMPFSASSYKSAGSGSGPGAWISGALALPAAAFMLQDQEVHASEIAEIISRFKQKGYKLVGIKVLVPSKTFAESHYHDLKERPFFNELCEFLSSGPVVAMIDMLLSFCTCIVNDLVITILIVTLTCKNIIHGSDGPETAKDEIKLWFKPEELVNYTGNAEKWIYVPYDCDSISVVEFHLRRTMAAKPLTTETIALTEKKMDMTLDDIIKMSKNSKTRKQRSVPNKSQKFSNNFTQDKSSKVRRYMESRSSLRQGALAKRRSNFQVNHFPVAAEVARKAVTASPHNKVNRVANWNKARFRVPVSQRRATSGGFAGKQPLPNPQKQQESVDIMPKQKPQTMDSLFANMTEQRMRDLSMRNNAVQRNGGGNRRLPWGRGRFGN* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02255 554 MobiDBLite consensus disorder prediction 397 412 - -
Rops1g02255 554 MobiDBLite consensus disorder prediction 531 554 - -
Rops1g02255 554 MobiDBLite consensus disorder prediction 492 508 - -
Rops1g02255 554 Coils Coil 518 538 - -
Rops1g02255 554 PANTHER RIBOSOME MATURATION FACTOR 357 554 - -
Rops1g02255 554 Pfam gag-polypeptide of LTR copia-type 50 140 - -
Rops1g02255 554 ProSitePatterns Nucleoside diphosphate kinases active site. 302 310 IPR023005 -
Rops1g02255 554 Gene3D - 206 278 IPR036850 -
Rops1g02255 554 SMART ndk_5 212 328 IPR034907 -
Rops1g02255 554 MobiDBLite consensus disorder prediction 477 508 - -
Rops1g02255 554 Gene3D - 284 340 IPR036850 -
Rops1g02255 554 Pfam Nucleoside diphosphate kinase 208 275 IPR034907 -
Rops1g02255 554 SUPERFAMILY Nucleoside diphosphate kinase, NDK 214 338 IPR036850 -
Rops1g02255 554 MobiDBLite consensus disorder prediction 387 416 - -
Rops1g02255 554 PRINTS Nucleoside diphosphate kinase signature 249 268 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Rops1g02255 554 PRINTS Nucleoside diphosphate kinase signature 205 227 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02255 Rops-Chr1 44608048 44618099 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02255 - - gmx:102659628 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02255 1 44608048 44618099 Rops2g00455 2 6514719 6520533 PCT