Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02254 ATGGCGCAGAAGAGATTCATCATTGAGGTTGAGAAAGCAAAGGAAGCTAGTGGAGAGAGGCCATCGAGAGGACCTGTGTATCGCAGCCTCTTCGCCAAGGATGGATTTCCTCCTCCTGTCGAAGGACTCGATAGCTGCTGGGATGTTTTCCGAATGTCTGTTGAGAAATATCCAACAAATCCAATGCTTGGAACCCGGGAAATTGTGGATGGGAAGCATGGCAAGTACAAGTGGAAAACTTACAAAGAAGTTTATGACCTGGTGATGAAAGTTGGAAATTCCATTCGCAGCTGTGGTTATGGAGAAGGTGTAAAATGTGGTATTTATGGTGTCAACTGTGCAGAGTGGATTATGAGCATGGAGGCCTGCAATGCTCATGGACTTTATTGTGTTCCATTGTATGATACCTTAGGTGCTGGGGCTGTAGAATTTATTATATGCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAGCTATTGAAGACATTTCCTAATGCAACAAAGTATCTCAGGACACTTGTGAGCTTTGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAAGTTTGGGTTGGCAATATATTCATGGGAAGAATTTTTACAACTGGGTGAAAATCAGAGTTTCGATATTCCTGTGAAGAAAAGGAGTGACATATGTACTATAATGTATACTAGCGGAACTACTGGTGACCCTAAGGGTGTGTTGATATCCAATGAGAGTATTATTACTCTCTTAGCTGGGGTTAAGGGATTCTTGGAGGGTGTCAATGAACAATTGCATGAGAAGGATGTATACCTATCGTTCCTTCCTCTTGCTCATATCTTTGATAGGGTCATTGAGGAGACATTCATATGGCACGGTGCCTCAATAGGTTTCTGGCGTGGGGATGTCAAATTGTTAATTGAAGACATTGGGGAGCTAAAACCAACTGTTTTCTGTGCTGTTCCCCGTGTGCTCGATAGAGTGTACTCAGGCTTGACACAGAAGGTTTCTTCCAAGGGCTTCCTAAAACAAACAATATTCAACTTTGCCTACTCACATAAGTTGCGTAACATGAAGAAAGGGCATAAGCACGACGAAGCATCTCCACTTCTTGACAGAATTGTGTTTAATGAGGTAAAGCGAGGTTTAGGGGGCAATGTACGTCTTATTTTGTCTGGAGCAGCACCTCTATCGGCACACGTGGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAAGGATATGGTCTGACTGAAACCTGCGCGGGAACCTTTGTCTCATTACCAAATGAACTGGAAATGCTTGGAACAGTGGGCCCTCCTGTACCAAATGTGGATGTGTGCCTGGAATCTGTTCCTGAAATGGGATACGATGCCCTTGCAAGCACACCAAGAGGAGAAATTTGTATAAAGGGAAAAACATTGTTTTCAGGGTACTACAAACGTGAAGACCTCACGAAAGAGGTTCTGATCGATGGATGGTTCCATACAGGGGATATTGGTGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAAGAAGAATATATTTAAGCTTTCACAAGGAGAATATGTTGCTGTTGAAAACCTGGAGAATATTTATGGTCAACTTTCTTCTATTGAATCCATATGGATTTATGGAAACAGTTTCGAGTCCTTCCTTGTTGCTGTTATTAACCCCAGCAAGCAAGCACTTGAACGTTGGGCAGAAGAAAATGGCATAAGCAAGGATTTCGATTCTCTCTGTGAAGACTCTAGAGCAAAAAGTCACTTTCTTGAAGACCTCTCAAAGATTGCGAAGGAAAAGAAGTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCATCTGGACCCAGTTCCATTTGACATAGAACGTGACCTTATCACTCCAACATATAAGAAGAAGAGACCTCAGCTGCTTAAATACTATCAGAATGTCATTGATAACATGTACAAGAGTGGAGGTAAACCAAGTGCCTGA 1989 0.4228 MAQKRFIIEVEKAKEASGERPSRGPVYRSLFAKDGFPPPVEGLDSCWDVFRMSVEKYPTNPMLGTREIVDGKHGKYKWKTYKEVYDLVMKVGNSIRSCGYGEGVKCGIYGVNCAEWIMSMEACNAHGLYCVPLYDTLGAGAVEFIICHAEVSIAFAEEKKIPELLKTFPNATKYLRTLVSFGKVTPEQKQEVEKFGLAIYSWEEFLQLGENQSFDIPVKKRSDICTIMYTSGTTGDPKGVLISNESIITLLAGVKGFLEGVNEQLHEKDVYLSFLPLAHIFDRVIEETFIWHGASIGFWRGDVKLLIEDIGELKPTVFCAVPRVLDRVYSGLTQKVSSKGFLKQTIFNFAYSHKLRNMKKGHKHDEASPLLDRIVFNEVKRGLGGNVRLILSGAAPLSAHVEGYLRVVTCAHVLQGYGLTETCAGTFVSLPNELEMLGTVGPPVPNVDVCLESVPEMGYDALASTPRGEICIKGKTLFSGYYKREDLTKEVLIDGWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENLENIYGQLSSIESIWIYGNSFESFLVAVINPSKQALERWAEENGISKDFDSLCEDSRAKSHFLEDLSKIAKEKKLKGFEFIKAVHLDPVPFDIERDLITPTYKKKRPQLLKYYQNVIDNMYKSGGKPSA* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02254 662 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 18 654 - -
Rops1g02254 662 SUPERFAMILY Acetyl-CoA synthetase-like 43 655 - -
Rops1g02254 662 Pfam AMP-binding enzyme 54 524 IPR000873 -
Rops1g02254 662 CDD LC-FACS_euk 74 655 IPR045311 GO:0004467|GO:0006631
Rops1g02254 662 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
Rops1g02254 662 Gene3D - 43 516 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02254 Rops-Chr1 44572690 44583816 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02254 3 656 Acyl Lipid Metabolism Gene Families AT4G23850 74.924 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02254 K01897 - gmx:100814965 1231.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02254 1 44572690 44583816 Rops1g02254 1 44572690 44583816 ECH