Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02248 ATGGCGAAGGAATTGTTGAGCCTTGATAATGGCACAACCTGTTCATCCTGGAACTACTCTGGCACCAGACTCGCTGCTGGTTCCGCTGATGGCACGCTTTCAATCTTCGATTTCCGCGACCCACCTTCTTCTTCTTCCTCCCTCCGTTGCACTTCCAAATCTAAGATTCATGAAGGAAACATCGTGAAGATTGTTTGGGTTCCGCCAGAGTATGGTGATGCAGTTGCATGTATTACTGCTGATGGAATTGTGTCATTGTGGGAGGAGGTTGTGGAAGATTCACAGCCTCTTCAGTGGAAGATTTGCAAAAGCTTTGGAAGCAGTTCAAGCAAAGTTCTTGATGTTCAATTTGGAATTTCCTTGACTGGTTTGAAAATGGTTGCAGCGTATTCAGATGGTCATGTGAGAGTTTTTGAGCTCTTGGATCCCTTGGAACTGAAAAACTGGCAGCTTCAGGCTGAATTTCAAAATGTTATCGAGTCAGTGTCTGCATTTGGAAAGGCTTTGTGCCTTTCTGCATCCATATCTTTTAATCCACAAAAAGTTGGAAGCCAGGAATCCAGCTTCCTTGTAGGTTTTAATTCAAATACATCAGAGCTTAATTCTTCCAAGGTATGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCAGTTGCAGAATTGGCACTGCCCGAGGACAAGGGTGATCAGGTTTATGCTGTTGCATGGGCACCGAATATTGGCAGACCGTATGAAGTCATTGCAATTGCAACTCACAAGGGACTTGCAATATGGCACCTTGATCATAATGGGAGACTCCCAGTGGAGAGAGTTGCACTGCTGTCGGGTCATGAAGGCATGGTATGGCAAATGGAGTGGGATATGAGCGGAATGACATTGGCTACTACAGGTCATGATGGAATGGTCCGACTATGGCAATCTAATCTCAATGGCGTTTGGCATCAGCAGGCTGCGTTTGAACCCACTTCTTAG 972 0.4547 MAKELLSLDNGTTCSSWNYSGTRLAAGSADGTLSIFDFRDPPSSSSSLRCTSKSKIHEGNIVKIVWVPPEYGDAVACITADGIVSLWEEVVEDSQPLQWKICKSFGSSSSKVLDVQFGISLTGLKMVAAYSDGHVRVFELLDPLELKNWQLQAEFQNVIESVSAFGKALCLSASISFNPQKVGSQESSFLVGFNSNTSELNSSKVWEFDQAHQRWLPVAELALPEDKGDQVYAVAWAPNIGRPYEVIAIATHKGLAIWHLDHNGRLPVERVALLSGHEGMVWQMEWDMSGMTLATTGHDGMVRLWQSNLNGVWHQQAAFEPTS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02248 323 SMART WD40_4 47 88 IPR001680 GO:0005515
Rops1g02248 323 SMART WD40_4 98 139 IPR001680 GO:0005515
Rops1g02248 323 SMART WD40_4 267 306 IPR001680 GO:0005515
Rops1g02248 323 SMART WD40_4 1 37 IPR001680 GO:0005515
Rops1g02248 323 Pfam WD domain, G-beta repeat 274 305 IPR001680 GO:0005515
Rops1g02248 323 Pfam WD domain, G-beta repeat 13 37 IPR001680 GO:0005515
Rops1g02248 323 SUPERFAMILY WD40 repeat-like 10 306 IPR036322 GO:0005515
Rops1g02248 323 Gene3D - 5 320 IPR015943 GO:0005515
Rops1g02248 323 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 306 IPR001680 GO:0005515
Rops1g02248 323 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 9 321 IPR037363 GO:0005198
Rops1g02248 323 FunFam Nucleoporin SEH1 9 321 - -
Rops1g02248 323 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 306 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02248 K14299 - gmx:100780788 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02248 1 44435250 44438220 Rops1g02248 1 44435250 44438220 ECH