Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02245 ATGGCGTCCAAAGATACTATCGCCAACGAAGCAAAGGTTGCCGCCGGTGAAGGTGTGAAACCTCCTACTCCTGTGTTTCTCAGTATCTGCAAGTCTCTCGTCGCCGGCGGAGTCGCCGGTGGAGTGTCACGAACAGCTGTGGCTCCTCTAGAGAGATTAAAGATTCTACTGCAGGTTCAAAATCCTAGCAATATAAAATACAACGGAACAATTCAAGGCTTAACATATATATGGAAAACTGAGGGCTTTAGAGGAATGTTTAAAGGAAACGGAACTAATTGTGCTCGTATTATCCCAAATTCCGCAGTGAAGTTCTTTAGCTATGAGCAAGCATCCAAGGGCATTTTATGGCTCTACCAGCGGCAAACTGGAAATGAAGAAGCTCAGCTCACTCCTCTTCTGCGTCTTGGAGCTGGCGCATGTGCGGGAATCATTGCTATGTCTGCAACTTACCCTATGGACATGGTGCGAGGAAGGCTAACTGTACAGACAGAAGCATCTCCTCGTCAATACACAGGAATTTTTCATGCTCTTTCAACTGTCTTCCGGGAAGAAGGCCCTCGAGCATTGTATAAAGGATGGCTACCTTCAGTCATAGGAGTTATACCGTATGTGGGTCTTAATTTTTCTGTATATGAATCTCTGAAAGACTGGCTGATTCGATCTAAACCACTTGGAATAGATCAAGACTCTGAGCTAAGTGTGACCACAAGGCTTGCATGTGGGGCTGCTGCAGGAACTGTTGGCCAGACAGTCGCATACCCACTTGATGTAATTCGCCGAAGAATGCAGATGGTGGGCTGGAAAGATGCTTCTTCAGTAGTAGCTGGTGAGGGGAAGAGCAAAGCTGAGTACACTGGCATGGTTGATGCATTCAGGAAAACCGTTCAGTATGAGGGATTTGGAGCATTATACAAGGGCTTAGTCCCCAATTCAGTGAAGGTGGTCCCTTCTATAGCTATTGCTTTCGTGACATACGAGATGGTCAAGGACATTCTTGGAGTTGAATTCAGAATATCTGACTGA 1026 0.461 MASKDTIANEAKVAAGEGVKPPTPVFLSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPSNIKYNGTIQGLTYIWKTEGFRGMFKGNGTNCARIIPNSAVKFFSYEQASKGILWLYQRQTGNEEAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEASPRQYTGIFHALSTVFREEGPRALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIRSKPLGIDQDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDASSVVAGEGKSKAEYTGMVDAFRKTVQYEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVEFRISD* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02245 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 130 218 IPR018108 -
Rops1g02245 341 PANTHER SOLUTE CARRIER FAMILY 25 29 335 - -
Rops1g02245 341 Pfam Mitochondrial carrier protein 28 113 IPR018108 -
Rops1g02245 341 Pfam Mitochondrial carrier protein 130 221 IPR018108 -
Rops1g02245 341 Pfam Mitochondrial carrier protein 232 333 IPR018108 -
Rops1g02245 341 SUPERFAMILY Mitochondrial carrier 27 328 IPR023395 -
Rops1g02245 341 Gene3D Mitochondrial carrier domain 26 335 IPR023395 -
Rops1g02245 341 PRINTS Mitochondrial carrier protein signature 45 59 IPR002067 GO:0055085
Rops1g02245 341 PRINTS Mitochondrial carrier protein signature 145 163 IPR002067 GO:0055085
Rops1g02245 341 PRINTS Mitochondrial carrier protein signature 242 264 IPR002067 GO:0055085
Rops1g02245 341 PRINTS Mitochondrial carrier protein signature 89 109 IPR002067 GO:0055085
Rops1g02245 341 PRINTS Mitochondrial carrier protein signature 32 45 IPR002067 GO:0055085
Rops1g02245 341 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085
Rops1g02245 341 FunFam Mitochondrial substrate carrier 25 335 - -
Rops1g02245 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 332 IPR018108 -
Rops1g02245 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 114 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02245 Rops-Chr1 44397660 44401682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02245 13 336 EF-hand Containing Proteins AT5G51050 39.275 2.40e-66 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02245 K14684 - gmx:100787733 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02245 1 44397660 44401682 Rops1g02245 1 44397660 44401682 ECH