Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02213 ATGGGGTACTATTTGTTGATATGTGGTATGTTCTTATGGTATGCCATGGTTGCTCACAATCACAATGGACTAGCCATGATGGATGAGGAGCCAATAAGTTCCTCAGCTAATTATGACTATGCAGATGCTCTTGGCAAAGCCATCTTGTTTTTTGAAGGACAACGCTCAGGGAAGTTACCCACCAACCAGAGAGTGAAGTGGAGGGGAGACTCAGCTCTCTCTGATGGCAAGCTCCAAAATGTGGATTTGGTCGGAGGATACTATGATGCGGGTGATAATGTCAAGTTTGGATGGCCAATGGCATTTTCGGTCAGTTTATTGAGTTGGGCAGCTGTTGAGTATGAGAGTGAGATATCTTCAGTGAACCAGCTTGGCTACCTCCACAGTGCTATCCGCTGGGGTGCAGACTTCATATTGCAAGCTCACACATCCCCAACCACCCTCTTTACCCAGGCGGGAGATGGGAACGCAGATCACCAATGTTGGGAGCGCCCAGAAGACATGGATACACCAAGAACAGTCTACAAGATTGATGCTAATTCACCAGGAACTGAAGCTGCAGCTGATTCTGCTGCTGCTCTTTCTGCTGCTTCCATTGTCTTCAAGAAAATAGATGCCAGTTATTCCTCGAGGCTATTAAGCCAGTCAAAATCATTGTTTGATTTTGCTGACAAGTATAGAGGTACTTACTCGGGTTCTTGCCCATTCTACTGCTCTTACTCTGGCTACCAGGATGAACTGTTATGGGCTGCTTCTTGGCTATATAAGGCCAGTGGAGAAAGCAAGTACTTGAGCTACACCACAGGCAACCAAGGTTGGAGTCAGGCAGTGTCTGAATTCAGCTGGGATAACAAATTTGTTGGAGCTCAGACATTATTAACTGAGGAATTCTATGGTGGGAAGAAGGACTTAGCCAAGATCAAGAGTGACGCTGAATCATTTATATGTGCAGTGATGCCAGGAAGTAGCTCTCTACAGATTAAAACAACTCCTGGCGGGCTTCTGTATACTAGAGACAGTAGTAATTTGCAATACACCACGAGCTCAACCATGGTGCTATTCATTTTCTCCAAAATCCTAAGCAGAAATCATATTGATGGAATCAATTGTGGCTCTGCCCATTTCTCCCCCTCTCAAATTAGAGCCTTTGCAAAAACACAGGTGGACTACATACTAGGAAACAATCCCATGAAGATGTCCTACATGGTGGGATTTGGAAGTAAATACCCAAAGCAATTGCATCACAGAGGCTCTTCCATTCCTTCAATAAAAGTTCACCCAGCCAAGGTGGGTTGCAATGATGGTCTCTCAAACTATTATTCTTCCACGAATCCAAATCCAAATACTCACGTGGGTGCAATTGTTGGAGGCCCTGATTCGAATGACCAATTCAATGATGCAAGATCTGACTATTCTCACACCGAACCTACCACCTATATGAATGCTGCTTTCGTTGGTTCAGTGGCTGCTTTGCTTGGCTAA 1482 0.4487 MGYYLLICGMFLWYAMVAHNHNGLAMMDEEPISSSANYDYADALGKAILFFEGQRSGKLPTNQRVKWRGDSALSDGKLQNVDLVGGYYDAGDNVKFGWPMAFSVSLLSWAAVEYESEISSVNQLGYLHSAIRWGADFILQAHTSPTTLFTQAGDGNADHQCWERPEDMDTPRTVYKIDANSPGTEAAADSAAALSAASIVFKKIDASYSSRLLSQSKSLFDFADKYRGTYSGSCPFYCSYSGYQDELLWAASWLYKASGESKYLSYTTGNQGWSQAVSEFSWDNKFVGAQTLLTEEFYGGKKDLAKIKSDAESFICAVMPGSSSLQIKTTPGGLLYTRDSSNLQYTTSSTMVLFIFSKILSRNHIDGINCGSAHFSPSQIRAFAKTQVDYILGNNPMKMSYMVGFGSKYPKQLHHRGSSIPSIKVHPAKVGCNDGLSNYYSSTNPNPNTHVGAIVGGPDSNDQFNDARSDYSHTEPTTYMNAAFVGSVAALLG* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02213 493 Pfam Glycosyl hydrolase family 9 40 486 IPR001701 GO:0004553|GO:0005975
Rops1g02213 493 SUPERFAMILY Six-hairpin glycosidases 37 492 IPR008928 GO:0005975
Rops1g02213 493 FunFam Endoglucanase 36 493 - -
Rops1g02213 493 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 464 482 IPR033126 -
Rops1g02213 493 Gene3D - 35 493 IPR012341 GO:0005975
Rops1g02213 493 PANTHER ENDO-1,4-BETA-GLUCANASE 13 491 - -
Rops1g02213 493 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 390 416 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02213 Rops-Chr1 43823014 43831234 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02213 39 492 Glycoside Hydrolase AT4G23560 71.366 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02213 - - gmx:547834 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02213 1 43823014 43831234 Rops1g02213 1 43823014 43831234 ECH