Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02142 ATGGGTGATGATCTCTTTCGTGAGCACAAAGTGCCATCTGGTATCATCAAAGCAATAAAGTTTGATGTTTTAACTGAGAAAGATATAGAGAATATCTCTGTTTTGGAGATAAATGCAGTCGGGCAGGTCACTTGTTCTGATTTGGGACTTCCAAATCCATCTTTTGAGTGCACCACATGTGGTTCTAAGGACAGGAGGTTTTGTGAAGGTCATTTTGGAGTAATCAGATTTCCTTTGGCCATCATGCATCCATATTTTATGTCAGAGATTGCAGAAATCTTGAACAAGATTTGCCCTGGATGTAAATCTATTCGACGCAAATTACAGATCAAGGGTATCAAATTAATCTCTGGAATCAAGCAGCCAAATGGTTGCAAATATTGTTCTGGAAATAGTATGAGTCGTTATCCAACAATGAAATTCAGAGTTTCCTCCACTGATCTCTATAGAAGAACTGCAATTATTGTTGAAGTAAATGATAAGGCCTCAAAGAAAATGACTTCGGGGCGAGGATTGCCAGCTGACTATTGGGATTTCATTCCCAGAGATGCTCAACAAGAAGAAAGCCATGTAAATAGAAGGGTTTTATCACCTTTTCAGGTTCACCATTTGTTAAGTGATGTTGATCCAAACTTCATTGAAAAATTTGTTCCAAGAGAGGATTTGCTTAGTCTCAATTGTTTCTTGGTGACACCAAATTGTCATCGCGTGACAGAAGTCCCTCACGGATATTCCAATGAATTGAGTTTTGATGACAGGACCAGGGCTTGTAAGAAATTGGTTGATTTCAGGGGTACAGCTAATGAGTTGAGTTCTCGTGTTTTGGATTGCCTGAGGATCTCTAAGCTAAATCCTGATAAAACACCAAGTACTATTTTTACTGATATCCAGCAAAGAAAGGTTGCAGAAAATGCTTGCAATTCTTCTGGCTTAAGATGGATGAAAGATGTGATTCTTGGAAAACGCAATGATAGCACATTCCGCACTGTGGTTGTTGGCGATCCAGACCTTAAGCTTAGTGAAATTGGTTTACCTTGTCAAATTGCAGAAAGTTTGCAGGTTTCGGAGTCTGTGAATAGGCAGAATAAAGAAAAATTGCTTTACTGTTGTGAGCTACGCCTGTTAGAGAAGGGACAGATAAATGTATGCAGAAAGGGTAGTTCAGTTGTTCTGTATAAAAAGGAAGAGCTTAAGATAGGAGACGTATTTTATAGGCCCCTTGGTGATGGGGATAAAGTGTTGATAAATAGGCCCCCTTCAATACATCAACATTCTATGATTGCTCTTACGGTCAGGGTCCTTCCGATATCTTCGGTGGTAGCTATTAACCCACTGTGTTGTTCGCCACTGCGTGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCAGTTGGCGCAAGAGTTGAGCTTAATGAGCTGGTTGCTTTGGATAAACAATTGATTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCTCAGGATAGTTTAACTGCTGCATATTTGCTTATGGAAGACGGTGTCCTTTTGAATGTTTACCAAATGCAGCAGCTTCAAATGCTTTGCAATAAAAAATTAACACCTCCTGCAATTGTTAAAACTCCTTCAAGGAATACCTCATTTTGGACTGGCAAGCAATTGTTTAGCATGCTCTTGCCTTTTAATTTTGACTATTCTTTTCCTTCAAATAGTGTTTTTGTTAGTGATGGGGAACTAATGTCTTCTTCTGAGGCTTCTGGTTGGTTACGTGACTCTGACTGCAATGTTTTCCAGAGTCTTGTGGAACATTTTCAAGGCAAGACTTTAGACTTCTTGTATGGTGCACAGAAAGTTCTTTGTGAGTGGTTATCTATGACAGGGCTTAGTGTTTCACTGTCAGACTTGTACCTTTCTTCTAACTCCAATGCACGGCAAAACATGATGGAGGAAATCTCCAATGGCTTACAAGAAGCAGAAAAGGCATGTGATTTTAATCAGTTATTGGAGGATTATTATTGTGATTTTCTTTCAGGAAGTCTTGAAGAGAATGAAAATGTTATGACTGTTGATGTGGATCGTCTGAATTATGAAAGGCAAATATCTGCTGCTCTCAGTCAAGCATCAGTTGATGCGTTTAGACAAGTTTTTCGCTATATTCAAAGTTTAGCTGATAAATATGCATGGAAGGACAATGCTTTCCTTACCATGTTCAAAGCCGGTAGCAAAGGGAATTTACTGAAATTAGTGCAACATTGCATGTGCCTTGGACTACAACATTCTCTGGTTCGCTTGTCATACAGAATTCCCCGTAAACTCTCATGTACTGCTTGGAATAGTCAAAAGGGGCTTGATTCAATGCAGATGTTTTCTGATACTCTTCAATTTGTCCAGTCTTTCATTCCATACGCTGTGGTTGAAAGCTCTTTTCTGACTGGATTGAATCCACTTGAATGTTTTGTTCATTCAGTGACAAATCGTGATAGCTCTTTCAGTGACAACGCAGATTTACCGGGAACATTGACACGTAAACTTATGTTCTTCATGCGTGATTTGTATGATGCCTATGATGGAACAGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATACCAATGAGGACTCGTCTTGTGATAACTGTTTCCGAGGGGATACTGTAGGCGGTGAACCAGTTGGAGCACTTGCTGCTTGTGCAATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAGTTAGTCTGCTTGAAACATCACCTTTGTTGAATTTAAAATATGTTCTGGAATGTGGTTCAAGGAAAAAAAGTGGCGACCAGACTGTGTCTTTATTTTTGTCTGAGAAACTTGGTAAACAAAGACATGGGTTTGAGTATGCAGCCCTAGAAGTTAAGAATTATTTGGAAAGATTGATGTTCTCAAGCATTGTTTCTACCGTCTTGATAATATTCACCCCACAGTCTTGCAGCCTAGAAAAATACAGTCCTTGGGTTTGCCATTTTCATTTAGACAAGGAAAATGTAAGAAGAAGGAAATTAACAGTGCATTCTATCATTGAATCTCTTTACCAGCGACATGACTCGCAAAGAAAAGCATCAAAAGTCGCTGTTCCTAATTTGAAAATATCAAGCAAGAAGTGTTCTGCAGATTACATGGCTAAGGAAGGGAGGGATACTTCTGTAGATATTGAAAAGGAAGGTGAAGATTGCATCACTGTCGCAATTGTTGAAAACTCTAAGAATTATGTACCACTTGATGCTATTCGGGATGAGATGATACCTTTCCTTTTAGGAACAGCTATAAAAGGATTTCTGGAGATCAAGAAGGTTGATATTCTCTGGAATAATTTGTCAAAAGTATCAAATTCTTATAATGGTTCTTCTGGTGAACTATACTTGAGGGTTACTATGTCCAGCGACAGTGACAGTGGAAGATTCTGGGGTGTACTCATAAATCATTGTCACAAGATAATGCCAATGATTGACTGGGCACGAAGTCATCCGGATAACATCCATCATTTCTGCTCAGCCTATGGAATTGATGCAGGGTGGCAGTATTTTCTCCATAGTTTAGCATCTGCAACATCAGAAACTGGCAAGTCAATCCTTCCTAAGCATCTGAGTCTTGTTGCCAATAGTCTGTCATCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCACGACAAAGAAAACATGCTTCAGTTTCATCACCCTTTGTGCAAGCATGCTTTTCTAATCCAGGTACTTCCTTTATAAAAGCTGCTAAGTCTGGAGTCATGGATAATCTCCAGGGCAACCTAGATGCAATGGCTTGGGGAAATTGTCTGTCCATGGGAACAAGTGGACAGTTTGATATCATATATTCAGAGAAGGTACAAGAGCTTGCTAAGCCTGTAAATGTGTATAACCTGCTAGAATCCAGTTTTGACCAGCAGAATAAGATTGATACCCCTCATTTTCACAACTATTCTTTGCACAAATGCGGCGGTTCTGAGTTAAAGCATAAAAATGGTGGTTATGCCTTGAAAGAATGTAAACAGTGGAAAAACATTTTAAGAAATTTTGTCACTGTAAATGATATTCGGAAGCTGACTTCTGCATCAAGGTTCATATTGAACAAGTATTCGATTGATCAGCTACTAAGTGAGAGGGACAAGTTAACAATGCTTAAGGTTTTGCATTTTCATCCTCATAGAAATGAGAAGTTTGGCTCTGGACCACAGGACATAAAGGTTGGATGGCATCCTAAATACAAGGAAACCCGCTGCTTCTTTATAGTACGAACTGATGGGACTGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGATATTGTTGATCCAAAAAAGTCAAAGATCCAGAAACAAAAATGGTTGGGACATGATGACATGGAAGCTGTCTCCATGTCTGTCCAAACATAA 4425 0.3921 MGDDLFREHKVPSGIIKAIKFDVLTEKDIENISVLEINAVGQVTCSDLGLPNPSFECTTCGSKDRRFCEGHFGVIRFPLAIMHPYFMSEIAEILNKICPGCKSIRRKLQIKGIKLISGIKQPNGCKYCSGNSMSRYPTMKFRVSSTDLYRRTAIIVEVNDKASKKMTSGRGLPADYWDFIPRDAQQEESHVNRRVLSPFQVHHLLSDVDPNFIEKFVPREDLLSLNCFLVTPNCHRVTEVPHGYSNELSFDDRTRACKKLVDFRGTANELSSRVLDCLRISKLNPDKTPSTIFTDIQQRKVAENACNSSGLRWMKDVILGKRNDSTFRTVVVGDPDLKLSEIGLPCQIAESLQVSESVNRQNKEKLLYCCELRLLEKGQINVCRKGSSVVLYKKEELKIGDVFYRPLGDGDKVLINRPPSIHQHSMIALTVRVLPISSVVAINPLCCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDKQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLCNKKLTPPAIVKTPSRNTSFWTGKQLFSMLLPFNFDYSFPSNSVFVSDGELMSSSEASGWLRDSDCNVFQSLVEHFQGKTLDFLYGAQKVLCEWLSMTGLSVSLSDLYLSSNSNARQNMMEEISNGLQEAEKACDFNQLLEDYYCDFLSGSLEENENVMTVDVDRLNYERQISAALSQASVDAFRQVFRYIQSLADKYAWKDNAFLTMFKAGSKGNLLKLVQHCMCLGLQHSLVRLSYRIPRKLSCTAWNSQKGLDSMQMFSDTLQFVQSFIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRKLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDTNEDSSCDNCFRGDTVGGEPVGALAACAISEAAYSALGQPVSLLETSPLLNLKYVLECGSRKKSGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLMFSSIVSTVLIIFTPQSCSLEKYSPWVCHFHLDKENVRRRKLTVHSIIESLYQRHDSQRKASKVAVPNLKISSKKCSADYMAKEGRDTSVDIEKEGEDCITVAIVENSKNYVPLDAIRDEMIPFLLGTAIKGFLEIKKVDILWNNLSKVSNSYNGSSGELYLRVTMSSDSDSGRFWGVLINHCHKIMPMIDWARSHPDNIHHFCSAYGIDAGWQYFLHSLASATSETGKSILPKHLSLVANSLSSSGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGTSFIKAAKSGVMDNLQGNLDAMAWGNCLSMGTSGQFDIIYSEKVQELAKPVNVYNLLESSFDQQNKIDTPHFHNYSLHKCGGSELKHKNGGYALKECKQWKNILRNFVTVNDIRKLTSASRFILNKYSIDQLLSERDKLTMLKVLHFHPHRNEKFGSGPQDIKVGWHPKYKETRCFFIVRTDGTVEDFSYRKCILGALDIVDPKKSKIQKQKWLGHDDMEAVSMSVQT* 1475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02142 1474 Gene3D - 315 486 - -
Rops1g02142 1474 Pfam RNA polymerase Rpb1, domain 3 483 631 IPR007066 GO:0003677|GO:0003899|GO:0006351
Rops1g02142 1474 SMART rpolaneu7 221 507 IPR006592 GO:0003677|GO:0003899|GO:0006351
Rops1g02142 1474 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 10 1288 - -
Rops1g02142 1474 Gene3D RNA polymerase Rpb1, domain 3 487 633 IPR042102 -
Rops1g02142 1474 PANTHER DNA-DIRECTED RNA POLYMERASE 20 1285 IPR045867 GO:0003899|GO:0006351
Rops1g02142 1474 Gene3D RNA polymerase ii 353 405 - -
Rops1g02142 1474 Pfam RNA polymerase Rpb1, domain 4 709 774 IPR007083 GO:0003677|GO:0003899|GO:0006351
Rops1g02142 1474 Pfam Protein of unknown function (DUF3223) 1369 1440 - -
Rops1g02142 1474 Gene3D - 635 809 IPR038120 -
Rops1g02142 1474 Gene3D RNA polymerase II, clamp domain 7 116 IPR044893 -
Rops1g02142 1474 FunFam DNA-directed RNA polymerase subunit 487 625 - -
Rops1g02142 1474 Gene3D - 1351 1442 - -
Rops1g02142 1474 CDD RNAP_IV_RPD1_N 24 856 IPR040403 -
Rops1g02142 1474 Pfam RNA polymerase Rpb1, domain 2 320 477 IPR000722 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02142 Rops-Chr1 42691280 42707587 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02142 K16250 - gmx:100796185 2319.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02142 1 42691280 42707587 Rops1g02142 1 42691280 42707587 ECH