Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02110 ATGCTTGTTCCGCTCAAAATGCTCTATCTATCCAACTCCAAAGTCTCGCATTTTGTCGCGAAAATGGCTGCTGCGAACTCCCATTGCCCCTCGTTCTCGAGTCTGGTATTTTTGCGTTCGGTTCGTTTGGGTCATACTTTGACACTAAGGAACTCTAACAATTCATGGCTTTGGGTTCAACCCTGCAGCCTCAGTCTCAGTGTGAGACCTCACGTGTCCGTTTGCAAGCGCCGCCGCCCCTCCGTCGCCACCATCTCCTTCAGCCTTCCCACAGCAAAGCCAGAGCGTGTTTCTCCCGGCCAGGAAATTCCCAAATGGTCTTCCAAGGCTATAAAATCATTTGCAATGTCTGAATTGGAGGCAAGGAAACTCAAGTATCCTACTACTGGCACTGAAGCCCTTCTCATGGGGATTCTTGTCGAGGGTACTAATCTAGCTGCTAAGTTCTTGCGTGCCCATGGAATTACACTTTTCAAGGTTCGAGATGAAACTGTGAAGCTACTTGGTAAAGCTGATATGTTTTACTTCAGCCCTGAGCATCCTCCACTGACTGATGACGCTCAAAGGGCCCTTGACTGGGCTGTTGATCACAAAATCAAATCTGCTGATGGCGGGGAAATCACCACATCACACGTAATTCTTGGCATTTGGTCTGAAGTGGATTCCCCTGGGCACAAGATACTGTCCACCCTTGGCTTTAATGATGAAAAAGCTAAAGAGCTAGAGTCCTCAATTTCTAAACCTGGGTTTACGGATGATTGA 762 0.479 MLVPLKMLYLSNSKVSHFVAKMAAANSHCPSFSSLVFLRSVRLGHTLTLRNSNNSWLWVQPCSLSLSVRPHVSVCKRRRPSVATISFSLPTAKPERVSPGQEIPKWSSKAIKSFAMSELEARKLKYPTTGTEALLMGILVEGTNLAAKFLRAHGITLFKVRDETVKLLGKADMFYFSPEHPPLTDDAQRALDWAVDHKIKSADGGEITTSHVILGIWSEVDSPGHKILSTLGFNDEKAKELESSISKPGFTDD* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02110 253 ProSiteProfiles Clp repeat (R) domain profile. 103 248 IPR004176 -
Rops1g02110 253 Gene3D - 105 253 IPR036628 -
Rops1g02110 253 SUPERFAMILY Double Clp-N motif 105 238 IPR036628 -
Rops1g02110 253 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 45 252 IPR044217 -
Rops1g02110 253 Pfam Clp amino terminal domain, pathogenicity island component 119 169 IPR004176 -
Rops1g02110 253 Pfam Clp amino terminal domain, pathogenicity island component 205 245 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02110 Rops-Chr1 42327281 42330440 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02110 - - gmx:100527844 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02110 1 42327281 42330440 Rops1g02110 1 42327281 42330440 ECH