Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02059 ATGTTCAACCCGGCAGATGAAGATGAAAACTTCCTCAAACAGTGGAACCCTAATAGACGAATGGAAGTTCTCGGAGTTGTTATCAACTGCGTTACTTCTCTTCTTTCATCGTCTTCACTTTCACAAGTAGGAATGTCAAAGAGCTACTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCTGAGGCAGCTAGGATTAGGGAGAAATACCCAGACAGGATCCCGGTAATTGTGGAGAAGGCTGAAAGAAGTGACATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGACCTGTCTGTTGGACAGTTTGTCTATGTTATCCGCAAAAGAATTAAATTAAGTGCAGAAAAGGCAATCTTTATATTTGTTGACAACGTCCTTCCTCCTACAGGAGCAATTATGTCCGCCATATATGATGAGAAGAAGGACGAAGATGGGTTTCTGTATGTTACATACAGTGGTGAGAACACTTTTGGGGATCTGACTTCCCACATTCAGGAGCCATTATAA 516 0.4205 MFNPADEDENFLKQWNPNRRMEVLGVVINCVTSLLSSSSLSQVGMSKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLSVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLTSHIQEPL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02059 171 Pfam Autophagy protein Atg8 ubiquitin like 58 161 IPR004241 -
Rops1g02059 171 SUPERFAMILY Ubiquitin-like 47 161 IPR029071 -
Rops1g02059 171 CDD Ubl_ATG8 56 158 - -
Rops1g02059 171 FunFam Autophagy-related protein 45 161 - -
Rops1g02059 171 Gene3D - 36 161 - -
Rops1g02059 171 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 47 161 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02059 Rops-Chr1 41431910 41443120 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02059 K08341 - gmx:100818620 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02059 1 41431910 41443120 Rops1g02059 1 41431910 41443120 ECH
Rops1g02059 1 41431910 41443120 Rops2g04259 2 77621149 77623657 PCT
Rops2g04262 2 77676890 77681156 Rops1g02059 1 41431910 41443120 PCT