Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01985 ATGGGCTGTTTCCACTCCAAAGATGGAAGATTTCGAGTACAGGAAGACCCAATAACTCTTGCATCACAGACAGCTTTCAGTGTCAGTGACGTTGAAGCATTATATGAGCTTTTCAAGAGCATCAGCAGATCTGTCATAGATGATGGACTCATAAGCAAGGAGGAATTTCAATTGGCAATTTTCAACAATAGCAAAAAGGAGAATCTCTTCACAAGTCGGATCTTTGATCTATTTGATGTTAAGAGGAAGGGGGTCATTGACTTTGGTGACTTCGTTAGAGCACTCAATGTCTTCCACCCAAATGCACCGCGAGAAGTAAAGATAGACTTTTCATTTAGGCTTTACGATTTGGACAGTACAGGTTTCATAGAGCGAGAGGAGGTCAAGCAAATGATAAATGCACTTCTTTGTGAGTCTGAAATTAAGTTAACTGATGACATGATAGAAACAATTATTCAAAAGACTTTCTTGGATGCGGACCCTAACCAAGATGGGAGAATAGACAAATCCGAGTGGCAACACTTTGTTTCTGAAAATCCGTCGCTACTGAAAATCATGACACTACCCTACCTGAGGGATATCACAACAACTTTCCCAAGTTTTGTATTTAACTCCAAGGTGGATGACGACATTAATGCTTGA 642 0.4019 MGCFHSKDGRFRVQEDPITLASQTAFSVSDVEALYELFKSISRSVIDDGLISKEEFQLAIFNNSKKENLFTSRIFDLFDVKRKGVIDFGDFVRALNVFHPNAPREVKIDFSFRLYDLDSTGFIEREEVKQMINALLCESEIKLTDDMIETIIQKTFLDADPNQDGRIDKSEWQHFVSENPSLLKIMTLPYLRDITTTFPSFVFNSKVDDDINA* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01985 213 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Rops1g01985 213 Pfam EF-hand domain pair 107 176 IPR002048 GO:0005509
Rops1g01985 213 PRINTS Recoverin family signature 121 139 - -
Rops1g01985 213 PRINTS Recoverin family signature 167 187 - -
Rops1g01985 213 PRINTS Recoverin family signature 74 95 - -
Rops1g01985 213 PANTHER CALCINEURIN B 1 209 IPR045198 GO:0005509|GO:0019722|GO:0019900
Rops1g01985 213 SUPERFAMILY EF-hand 20 202 IPR011992 -
Rops1g01985 213 Gene3D - 16 210 - -
Rops1g01985 213 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Rops1g01985 213 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
Rops1g01985 213 SMART efh_1 151 179 IPR002048 GO:0005509
Rops1g01985 213 SMART efh_1 70 98 IPR002048 GO:0005509
Rops1g01985 213 SMART efh_1 107 135 IPR002048 GO:0005509
Rops1g01985 213 CDD EFh 107 177 IPR002048 GO:0005509
Rops1g01985 213 ProSitePatterns EF-hand calcium-binding domain. 116 128 IPR018247 -
Rops1g01985 213 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Rops1g01985 213 FunFam calcineurin B-like protein 3 16 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01985 Rops-Chr1 40144834 40147590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01985 1 209 EF-hand Containing Proteins AT4G17615 75.238 4.56e-116 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01985 K06268 - gmx:100779020 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01985 1 40144834 40147590 Rops1g01985 1 40144834 40147590 ECH
Rops1g01985 1 40144834 40147590 Rops2g04339 2 79129921 79135092 PCT