LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g01972	ATGCTGGAGGATCAGGTAGCGTACCTTTTGCAAAGGTACCTTGGCAATTATGTAAGAGGTCTCAACAAAGAAGCTCTCAAAATCAGTGTCTGGAAAGGTGATGTAGAGCTGAAGAATATGCAGCTGAAGCCCGAGGCTCTAAATGCTTTAAAATTGCCGGTTAAGGTGAAGGCAGGCTTTCTTGGATCAGTGAAACTGAAGGTTCCATGGAGTAGGCTTGGCCAAGATCCAGTTATAGTATATTTGGATAGCATTTTCTTATTAGCTGAACCTGCAACTCAAGTTGAGAGATGTAGTGAAGATGCTGTCCAAGAAGCTAAGAAGAGCCGGATACAGGAGATGGAATTGAAACTGTGGGAGAAGTCACAAAGATTAAAGTCAGAAATGAATACATCATGGTTGGGATCCCTCATCAACACCATAATTGGAAATTTAAAGCTTTCAGTTTCTAATATTCACATCAGATATGAGGATGGTGAGAGCAATCCAGGGCACCCATTTGCAGCTGGTGTTATGTTGGACAAACTCTCAGCGGTGACAGTTGATGATACTGGGAAAGAGACTTTTGTTACCGGGGGTGCTCTAGATCGCATTCAAAAGTCTGTTGAACTTGATCGGCTTGCAGTTTATTTAGATTCAGATATTATTCCATGGCAAGTTAACAAAGCATGGGGAGATTTGCTTCCTTCTGAGTGGTTTCAGATATTTAAATTTGGTACTAAAGATGGGAAGCCAGCTGATAATTTGTTACGAAAGCACTCGTATATTCTGCAACCAGTGACGGGGACAGCAAATTACTCCAAGCTGCATCTGAATGAAGTTGCTGATAGCAAACAACCTTTACAGAAGGCTGTGGTGAATTTGGATGATGTTACAATCAGCTTATCTAAGGATGGATACAGCAATATCATGAAATTAGCGGACAACTTTGCTGCATTTAACCAACGTCTAAAGTATGCCCATTTTCGTCCACTGGTGCCGGTAAAAGCTGATTCCAGGTCTTGGTGGAAGTATGCTTACAGAGCTGTATCTGACCAGATGAAGAAGGCAAGTGGAAAAATGTCATGGGAGCAAGTTTTAAGATATACAAGCTTGCGGAAGAGATATATCTCTCTCTATGCTTCGCTGCTTAAATCTGACCCTAGTCAGGTGACAATTAGTGGCAACAAAGAGATTGAAGACCTAGATCGTGAACTTGATATTGAACTTATACTGCAATGGAGAATGTTGGCTCACAAGTTTGTGGAGCAATCAACGGAGTCAAATCTTAATGTGAGGAAACAGAAAGTGGAGAAATCTTGGTGGTCATTTGGATGGACCAGTCAAGCTCCTAAAGAGGAAAGTGAGGAATTTAATTTCAGCAAAGAGGACTGGAATCGGTTAAATAAAATAATTGGGTATAAGGAAGGTGATGATGCGCAAACGGCTGTGAATAGCAAGGAGGATGTTATTCATACTTTCCTGGTAGTTCACATGAATCATAATGCTTCAAAACTTATTGGGGAAGCAAACGAAGCTGTTGCTGAATTATCATGTGAAGACCTCAGTTGCTCAATAAAGCTTTATCCAGAAACAAAGGTCTTTGACATTAAGTTGGGCTCATATAAGCTATTATCACCAAAAGGTCTCCTTGCAGAGAGTGCCACTTCCCATGACTCATTAGTTGGTGTCTTCTATTATAAACCTTTTGATGAGAAGGTGGACTGGAGCATGGTTGCCAAAGCTTCTCCATGTTACATGACTTATATGAAGGATAGCATCGATCAAATTGTGAAATTCTTTGAAAGTAATACTGCTGTAAGTCAGACCATAGCACTAGAAACTGCAGCTGCTGTGCAGATGACAATTGATGAAGTGAAGCGCACAGCCCAGCAACAAATGAACAGAGCATTAAAGGATCATGCTAGGTTTTCATTGAACTTGGATATTGCAGCTCCCAAGATTACTCTTCCTACTGATTTTTGTCCTGACAATACCCATGCTACAAAGCTTTTACTGGACCTAGGGAATTTGATGATACGTACACAGGATGACTGTCAACAGGAATCATCTGAGGATAATATGTACCTACGATTTGATTTGGTTTTAAGTGATGTATCGGCATTTTTGTTTGATGGTGACTATCACTGGAGCCAAATTTCTCTGAATAAGTCAATGCATTCTACCAATAGTGGTTTCTTCCCAATTATTGACAGGTGTGGAGTCATCCTACAGCTTCAACTGATTTGGTTAGAGACCCCATATTATCCTTCAACGCGCCTTGCTGTGAGGCTTCCATCACTGGCGTTTCATTTTTCACCTGCTCGGTATCATCGACTGATGCATGTAATAAAGATGTTTGAGGAGGAGGATGGTGACAGCTCAGAGTTTCAACGTCCTTGGAATCAGGCTGACCTGGAGGGGTGGTTGTCTCTTCTAACATGGAAGGGTGTGGGAATTAGGGAAGCTGTGTGGCAGCGGAGATACTTCTGCTTAGTTGGGCCTTTTCTTTATGTACTTGAAAGTCCTGACTCAAGATCTTACAAGCAGTACACCAGGTGCAAAAGCCTTGTTTTTGTGTCTTCGTTATCATGTATGTATGTAAAGTCTGATTTTGTCAAATGTTGA	2607	0.4127	MLEDQVAYLLQRYLGNYVRGLNKEALKISVWKGDVELKNMQLKPEALNALKLPVKVKAGFLGSVKLKVPWSRLGQDPVIVYLDSIFLLAEPATQVERCSEDAVQEAKKSRIQEMELKLWEKSQRLKSEMNTSWLGSLINTIIGNLKLSVSNIHIRYEDGESNPGHPFAAGVMLDKLSAVTVDDTGKETFVTGGALDRIQKSVELDRLAVYLDSDIIPWQVNKAWGDLLPSEWFQIFKFGTKDGKPADNLLRKHSYILQPVTGTANYSKLHLNEVADSKQPLQKAVVNLDDVTISLSKDGYSNIMKLADNFAAFNQRLKYAHFRPLVPVKADSRSWWKYAYRAVSDQMKKASGKMSWEQVLRYTSLRKRYISLYASLLKSDPSQVTISGNKEIEDLDRELDIELILQWRMLAHKFVEQSTESNLNVRKQKVEKSWWSFGWTSQAPKEESEEFNFSKEDWNRLNKIIGYKEGDDAQTAVNSKEDVIHTFLVVHMNHNASKLIGEANEAVAELSCEDLSCSIKLYPETKVFDIKLGSYKLLSPKGLLAESATSHDSLVGVFYYKPFDEKVDWSMVAKASPCYMTYMKDSIDQIVKFFESNTAVSQTIALETAAAVQMTIDEVKRTAQQQMNRALKDHARFSLNLDIAAPKITLPTDFCPDNTHATKLLLDLGNLMIRTQDDCQQESSEDNMYLRFDLVLSDVSAFLFDGDYHWSQISLNKSMHSTNSGFFPIIDRCGVILQLQLIWLETPYYPSTRLAVRLPSLAFHFSPARYHRLMHVIKMFEEEDGDSSEFQRPWNQADLEGWLSLLTWKGVGIREAVWQRRYFCLVGPFLYVLESPDSRSYKQYTRCKSLVFVSSLSCMYVKSDFVKC*	869

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops1g01972	868	Pfam	N-terminal region of Chorein or VPS13	2	109	IPR026854	-
	Rops1g01972	868	Pfam	Repeating coiled region of VPS13	560	779	IPR031642	-
	Rops1g01972	868	PANTHER	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED	2	845	-	-
	Rops1g01972	868	Pfam	Vacuolar sorting-associated protein 13, N-terminal	133	374	IPR031646	-
	Rops1g01972	868	SUPERFAMILY	PH domain-like	793	862	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g01972	Rops-Chr1	39906921	39920528	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g01972	K19525		-	gmx:100780088	1548.1