Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01967 ATGGACTCACAGCAAAACAATCTATTCGAAACCGCTTCGCAACCCGACACGGGCAACGATGCTTACACTTTCCTCGAATTCAACACACAGGGTGAGGATTTCGACTACCCGGAGTTTCGTGACCCGATTAGGTCATCGGTGGCGTGGCCAACGCCCTCTGATTCATTGGCTGACCCGTCGGAGCGAGGTGGATCCGGGTCGGATCATCAGTCTGATGCCTCGCCGGTTTCTGCTGCTCCAGGTAGCGCGACGAAGGGGCGGTCGGGGAGCAGCGGCGGGAACAGCCAGCTGGTGGATTCACTAGCGGCTGGGATGAGTGGGTTGAATTTTGAGGATACTGGTGATGATGATAATTTTGAGTATGGAAAAGGAGATTTCACTGAACATGCTTGCCGTTATTGTGGGGTTTCCAATCCAGCATGTGTTGTGAGGTGCAATGTTCCTTCTTGTCGCAAATGGTTCTGTAATTCGCGGGGAAACACTTCTGGATCGCATATCGTGAATCACCTGGTTCGGGCAAAACACAAGGAAGTCTGTCTTCACAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAACTGCGGGTGTCGGAATGTGTTTCTCCTTGGATTTATTTCTGCAAAGACAGAAAGCGTGGTTGTCCTTCTTTGTCGGGAACCTTGCTTGAGTGTCAATGCCTTAAAGGACATGAATTGGGACCTTAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGGGCACGCCAAATAAGTGCACAGAAAATAAATAAGGTGGAAGAGTTGTGGAAGACCAATCCTGATGCTTCTTTTGAGGACCTTGAGAAGCCCGGTGTAGATGATGAACCTCAGTCTGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATCAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAACGTCACAATTCGATGGGATATCGGTCTTAATAAGAAGCGTGTTGCGTACTTTGTATTTCCAAAGGAAGATAATGAGTTGCGGCTTGTACCTGGTGATGAATTAAGATTGCGTTATTCTGGTGATGCTGCACATCCTGCGTGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCACTGGAGCTTCGTGCTAGTCAGGGGGTTCCGGTTGATGTCAACCATGGTTTCAGTGTTGATTTTGTCTGGAAGAGTACCAGCTTTGATAGGATGCAAGGAGCTATGAAAACCTTTGCCGTGGATGAGACAAGTGTTAGTGGTTACATATATCATCACTTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAATGCATTGCCTCGTCGCTTTGGTGCACCAGGGCTTCCGGAGCTGAATGCATCTCAAGTTTTTGCTGTCAAGAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACTGTAACCTCTGCAGCACTTGTATATCACATGGCCAAACAAGGTCAGGGGCAGGTTTTGGTTTGTGCACCCAGTAATGTAGCTGTGGATCAGCTGGCCGAAAAGATAAGTGCTACTGGATTAAAGGTCGTGAGGCTTTGTGCAAAGTCAAGGGAAGCTGTGAGTTCACCTGTTGAGCATTTAACTCTTCACTATCAGGTTCGACATCTTGACACATCTGACAAGAGTGAACTTCATAAGTTACAACAGCTGAAGGATGAACAAGGAGAACTTTCCAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTTATCTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTTGCAAATTTTAGGTTCCGTCAGGTACTTATTGACGAGTCCACTCAAGCAACAGAACCTGAGTGCCTCATTCCTTTGGTGCTTGGAGCAAAGCAGGTTGTTCTGGTTGGTGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCTCGTGCTGGGTTAGCACAGTCACTTTTTGAACGTCTTGTTCTACTTGGTGTCAAACCAATTCGGCTGCAGGTTCAGTACCGTATGCATCCATGCCTGTCAGAATTTCCCTCAAACAGCTTTTATGAAGGCACTCTGCAAAATGGAGTCACAGTTAATGAAAGGCAATCATCAGGAATTGATTTTCCATGGCCTGTACCAAACCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGAACATCTTATTTAAATAGGACTGAGGCTGCAAATGTTGAAAAGATTGTAACCACATTCTTAAAAAGTGGTGTGGTTCCAAGTCAGATTGGTGTGATAACACCTTATGAGGGACAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGGCAGCAACTTTACAAAGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTTTATCATGTGTTAGAAGTAATGAACATCAGGGCATTGGATTCCTGAATGATCCTAGGAGGCTCAATGTTGCTCTGACACGAGCAAGATATGGTATTGTTATTCTGGGAAACCCTAAAGTTCTGAGCAAGCAGCCTCTGTGGAATAGTTTATTGACTCACTACAAGGAACACGAATGCTTAGTTGAAGGGCCTTTAAATAACTTGAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAGAAGATTTACAATGACCGAAGGCTTTTTTATGGGGGTGGACCTGGAGTTGCAGCTAATGATAATTTTGGTTCTGTTGGCTCTGGCGCTGGCGCAGGCACAAGTTCTGATAGGAGGAGCAGCCGAGGAAGGGGATCTTATATACCTCCTGGCCCACCAAACGGAACCCATAAACCTGGAGTTCATCCTGCTGGGTATCCTGTGCCAAGGGTTCCCTTGTCTCCTTTTCATGGTGGTCCCCAATCTCAACCATATGCCATTCCATCTCGTGGGGCTGTTCATGGACCTGTTGGGGCAGTTCCCCATGTTCCATCACCGGGGAGTCGTGGTTTTGGGGCTGGAAGAGGTAATTCTGGTGCTCCAATTGGCAATCATCTTCCACACCAACAAGGCACGCAACAGCCTATTGGGAATCTTGGATCTACATTTAACTTCCCTGCTCTAGAGAATCCTAACAGCCAGCCATCTGTTGGTGGTCCATTATCTCAACCTGGGTTTGCCAATAATATGCCAGTCCAAGGGGCAGGCCAGTCATTTCGAGATCAATTTTCTGTGCCTGGAATGTCCCAGGACTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAATGTAACTGATTTCTCTACACAGGCTTCTCAAAGTGGATATGCTGTTGATTATGCTACACAAGGAGCACAAGGTGGATTCCCAGGGAACTTTCTTAACCAGAACTCTCAAGCTGGATATTCACGTTTTGGTTCTGGAAATGACTTTATGTCTCAGGACTACATGGCCCATGGATCACAAGGTCTTTTCACTCAGGTAGGATTCAGCGATCCCTTGCAAGATGATGCAACACAGGGCCATTTCAATGTGGCGAATGCCAACCCTCTTCAGTCCCAGATGAATTCTCTGTACTCCCAGCCTTTTGCTCACTACAACACACAGCCACTGAACATGCAGGCTTCCCAACCGCAGCCTCAGGGTCAAAGCTCCCAAAACCAGAAAATTCACTATAACGGTTGA 3798 0.4602 MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSSVAWPTPSDSLADPSERGGSGSDHQSDASPVSAAPGSATKGRSGSSGGNSQLVDSLAAGMSGLNFEDTGDDDNFEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQKINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGGGPGVAANDNFGSVGSGAGAGTSSDRRSSRGRGSYIPPGPPNGTHKPGVHPAGYPVPRVPLSPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQQGTQQPIGNLGSTFNFPALENPNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMAHGSQGLFTQVGFSDPLQDDATQGHFNVANANPLQSQMNSLYSQPFAHYNTQPLNMQASQPQPQGQSSQNQKIHYNG* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01967 1265 CDD 1B_UPF1-like 335 422 IPR040812 -
Rops1g01967 1265 Gene3D - 443 713 IPR027417 -
Rops1g01967 1265 MobiDBLite consensus disorder prediction 48 98 - -
Rops1g01967 1265 FunFam regulator of nonsense transcripts 1 homolog 335 423 - -
Rops1g01967 1265 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 123 282 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Rops1g01967 1265 MobiDBLite consensus disorder prediction 1 98 - -
Rops1g01967 1265 CDD ZBD_UPF1-like 130 252 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Rops1g01967 1265 Pfam AAA domain 579 682 IPR041677 GO:0004386
Rops1g01967 1265 MobiDBLite consensus disorder prediction 1243 1265 - -
Rops1g01967 1265 Pfam AAA domain 692 887 IPR041679 -
Rops1g01967 1265 Pfam Type III restriction enzyme, res subunit 485 547 IPR006935 GO:0003677|GO:0005524|GO:0016787
Rops1g01967 1265 FunFam Regulator of nonsense transcripts 1 714 925 - -
Rops1g01967 1265 Pfam RNA helicase (UPF2 interacting domain) 129 282 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Rops1g01967 1265 Pfam RNA helicase UPF1, 1B domain 334 423 IPR040812 -
Rops1g01967 1265 MobiDBLite consensus disorder prediction 949 1024 - -
Rops1g01967 1265 Gene3D - 335 423 - -
Rops1g01967 1265 Gene3D - 565 617 - -
Rops1g01967 1265 MobiDBLite consensus disorder prediction 954 969 - -
Rops1g01967 1265 Gene3D - 714 925 IPR027417 -
Rops1g01967 1265 MobiDBLite consensus disorder prediction 1 26 - -
Rops1g01967 1265 CDD SF1_C_Upf1 715 904 IPR047187 -
Rops1g01967 1265 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 488 620 IPR014001 -
Rops1g01967 1265 PANTHER DNA2/NAM7 HELICASE FAMILY 233 1009 IPR045055 -
Rops1g01967 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 910 IPR027417 -
Rops1g01967 1265 CDD DEXXQc_UPF1 479 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01967 Rops-Chr1 39750380 39763425 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01967 K14326 - gmx:100795594 2459.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01967 1 39750380 39763425 Rops1g01967 1 39750380 39763425 ECH