Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01953 ATGAAGGCAAGGAGAGGAAAACGCTCTGAGGCCTTTTGGCCTTCAATTGTGATGAAAAAATGGTTAAACATCAAGCCTAAGGCGAATGATTTTAGTGAAGATGAAATGGACACTGAAACTGAGAGTGAAGATGATGCTTGCTCTCCTAAAGATTCAAGAATGCACGTGCGTGAAGATAATCCATTTAGAACACAAGGGATTCAATCCAGATTCCCAAGTCAAACATCAGATGCATCTGGCAAGGGATACAAGACAAGACACAGAAGAGGAAGATCAGAAACTCTGCGTGCTCAGTACATAAATACGAAGGAAGTGAGGATAACAATTGGCACTTGGAATGTTGCTGGAAGACTTCCACATGAGGATCTTGAGATTGATGATTGGCTTTGTACTGAAGATCCAGCCGATATTTACATTCTTGGTTTCCAGGAGGTAGTTCCACTGAATGCTGGAAATGTACTGGGAGCAGAGGATAATACACCTATCCGGAAATGGGAGGCAATCATTCGAAGATCTCTAAACAAATCTTCTGAGCCTGACAGTAATCTCAAAAGCCACAGTGCCCCTCCTTCTCCAGTGTTAAGAACTTCGGCTGCTGCTGATATTCTAGCTGACTCTATAGATGCTGCTAATCATCCAATTGATGTAGGAACTATTGACAATTATGAACTGGAACAACTGGAAGTAAAAAACATAATTGATATAGGAAATGATTTACAGTTGAAGAAAGTATATGGTATTGATCTTGACTGGCCTGAACGTCCATTAGATGCAATCTCACAAATTGTTGATTCCAATCCAAAGTTGCGGAGAGTACTAAGCAGCTCAGACAGAATTGGCTTTAAGACTGAGAATGCTTTGAGATATGGTGGTGGATTGAAACGTTCACACCACAGTTCTGGAAACTTGGGTTTGTTATGGAAAGAGCATCAAGTCATACCTGAAGTGGTTGTTGATTCCTTAGTTGATGTCTCCGAGGTGTTATCTAACGAGGATGATGATGATACTTTTATTGAATTACCTGATAACCAAGCTGATAATGGATTAGACACCATGACATCATGTCCTTGTTATGTTCGGATTGTAAGCAAGCAGATGGTAGGGATATATGTATCTGTTTGGGTGCGGAGAAGGTTGAGAAGGCACATTAATTATTTGGAAGTTTCCCCTGTTGGAGTTGGTCTTATGGGCTACATGGGAAACAAGGGTTCTGTTTCAGTTAGTATGTCTCTCTTCCAGTCCCGTCTGTGCTTTGTATGTTCCCATCTGACTTCTGGTCAGAAGGATGGACAAAGGAGAAACTCTGATGTTCATGAAATTCTACGACGCACTTGCTTCTCTTCTGTCATTGATACAGATCAACCACAAACAATTCCATCTCACGATCAGATTTTCTGGTTTGGGGATTTGAATTACCGTATCAACATGTTAGATGCGGAGGTTCGAAAATTGGTGGCTCTAAAAAAGTGGGATGAACTGATGAATAATGATCAGCTAAGCAAAGAATTGCGTGCTGGGCGTGTATTTGATGGATGGAAAGAGGGGTCGATAAACTTCCCACCCACTTACAAATATGAAATTAACTCTGATAGATATGTCGGTGAGAACCCAAAAGAAGGGGAAAAGAAGAGATCTCCAGCATGGTGTGATCGTATTTTGTGGCTAGGAAAGGGAATAAAGCAACTACAATATGGACGTGCTGAAATGAAACTCTCAGATCATCGACCAGTTTGTTCAATCTTCTTGGTTGAAGTTGAAGTATTTGACCATCGCAAGTTAAAGAGAGCTCTAAATTTCACTAGTGCAGCAGTACACCCTATCTTTCTTAATGAAGATGGTGAAATATAA 1848 0.4075 MKARRGKRSEAFWPSIVMKKWLNIKPKANDFSEDEMDTETESEDDACSPKDSRMHVREDNPFRTQGIQSRFPSQTSDASGKGYKTRHRRGRSETLRAQYINTKEVRITIGTWNVAGRLPHEDLEIDDWLCTEDPADIYILGFQEVVPLNAGNVLGAEDNTPIRKWEAIIRRSLNKSSEPDSNLKSHSAPPSPVLRTSAAADILADSIDAANHPIDVGTIDNYELEQLEVKNIIDIGNDLQLKKVYGIDLDWPERPLDAISQIVDSNPKLRRVLSSSDRIGFKTENALRYGGGLKRSHHSSGNLGLLWKEHQVIPEVVVDSLVDVSEVLSNEDDDDTFIELPDNQADNGLDTMTSCPCYVRIVSKQMVGIYVSVWVRRRLRRHINYLEVSPVGVGLMGYMGNKGSVSVSMSLFQSRLCFVCSHLTSGQKDGQRRNSDVHEILRRTCFSSVIDTDQPQTIPSHDQIFWFGDLNYRINMLDAEVRKLVALKKWDELMNNDQLSKELRAGRVFDGWKEGSINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLQYGRAEMKLSDHRPVCSIFLVEVEVFDHRKLKRALNFTSAAVHPIFLNEDGEI* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01953 615 SMART i5p_5 285 589 IPR000300 GO:0016791|GO:0046856
Rops1g01953 615 MobiDBLite consensus disorder prediction 62 80 - -
Rops1g01953 615 SUPERFAMILY DNase I-like 95 602 IPR036691 -
Rops1g01953 615 Gene3D Endonuclease/exonuclease/phosphatase 313 608 IPR036691 -
Rops1g01953 615 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 17 602 IPR045849 GO:0004445
Rops1g01953 615 FunFam Type I inositol polyphosphate 5-phosphatase 2 295 607 - -
Rops1g01953 615 Gene3D Endonuclease/exonuclease/phosphatase 86 189 IPR036691 -
Rops1g01953 615 FunFam Type I inositol polyphosphate 5-phosphatase 2 85 197 - -
Rops1g01953 615 MobiDBLite consensus disorder prediction 28 90 - -
Rops1g01953 615 MobiDBLite consensus disorder prediction 43 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01953 Rops-Chr1 39629966 39634926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01953 351 595 Acyl Lipid Metabolism Gene Families AT2G43900 31.010 1.98e-35 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01953 K24221 - ccaj:109800886 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01953 1 39629966 39634926 Rops2g04369 2 79599672 79609940 PCT