Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01748 ATGGTATCTGAATCGGAACTTATCAGCCGCCTCCGCGAGTTCCTCCGGAACTCTGACCTCAACACCACCACCACCGCCACCGTGCGCCGCCAGTTAGAGAAAGATTTCGGAATCGATTTATCTGATAGAAAAGCATTCATAAGGGAACAAGTCGACTTGTTCCTTCAGAGTGAGCACCACCAACAAGAAGAACAAGATGAAGAAGATACTCACCAAGAACCACAAAACGACGACGTAAATGAAGAAGAAGAAGAAGATGGGGTTAAAGAAGAACAAAGCCAATGTTCTGATTCCAAGGAAGAAATAGAAGAAGATGATAATGATGATAGAGAAGAAGACAAACCGAAGCACCCCAGAAGTGGAAAGAATAAAAGACGATCTAACAAATTAGGTAATGAGGCAGTAAAGAAAAAAGGTGGTGGCTTTTGCAAATTATGTAGCCTGTCTCCGCAACTTCAAGAATTTGTTGGAGCGCCAGAAATGGCCAGAACTGAGGTTGTTAAGCAATTATGGGCTTATATTAGGGAGAAAAATTTGCAAGACCCAAACAATAGGCGAAATATCATTTGCGATGAACCATTGCGTGCCCTTTTTGGTGTCAATTCTATCAACATGTTCCAAATGAACAAGGCATTGTCAAAGCATATCTGGCCATTGGATTCAGATGATGTTGTCCAGGTGAAGTCAGCACCAAAGGAAAAGCAGAAGAAGCAAGAGAGAGACGATGATTCAGATGAGCCAAAAAGAAAGGAAAAACGGCAGAAAGGAGGAAAATCAGGTTTTCTTGCTCCTCTCCAGCTATCTGATGCCCTTGTAAACTTCCTCGGTACTGGAGAAAGTGAGTTATCAAGATCTGATGTCATAAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATATGTGATGAGAAGCTGAAAGAACTCTTTGATGTCGACTCCTTCATTGGCTTCACCGTTACAAAACTGCTGGCTCCTCATTTTATAAAGACACAGCAGTGA 1029 0.4179 MVSESELISRLREFLRNSDLNTTTTATVRRQLEKDFGIDLSDRKAFIREQVDLFLQSEHHQQEEQDEEDTHQEPQNDDVNEEEEEDGVKEEQSQCSDSKEEIEEDDNDDREEDKPKHPRSGKNKRRSNKLGNEAVKKKGGGFCKLCSLSPQLQEFVGAPEMARTEVVKQLWAYIREKNLQDPNNRRNIICDEPLRALFGVNSINMFQMNKALSKHIWPLDSDDVVQVKSAPKEKQKKQERDDDSDEPKRKEKRQKGGKSGFLAPLQLSDALVNFLGTGESELSRSDVIKRMWDYIKGNNLQDPSDKRKIICDEKLKELFDVDSFIGFTVTKLLAPHFIKTQQ* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01748 342 Gene3D SWIB/MDM2 domain 255 342 IPR036885 -
Rops1g01748 342 SUPERFAMILY SWIB/MDM2 domain 258 342 IPR036885 -
Rops1g01748 342 SUPERFAMILY DEK C-terminal domain 3 56 - -
Rops1g01748 342 CDD SWIB-MDM2_like 265 337 - -
Rops1g01748 342 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Rops1g01748 342 Coils Coil 88 108 - -
Rops1g01748 342 Gene3D SWIB/MDM2 domain 136 224 IPR036885 -
Rops1g01748 342 CDD SWIB-MDM2_like 146 216 - -
Rops1g01748 342 FunFam Upstream activation factor subunit 136 224 - -
Rops1g01748 342 SUPERFAMILY SWIB/MDM2 domain 137 220 IPR036885 -
Rops1g01748 342 Gene3D - 1 59 - -
Rops1g01748 342 MobiDBLite consensus disorder prediction 227 257 - -
Rops1g01748 342 Pfam SWIB/MDM2 domain 145 216 IPR003121 -
Rops1g01748 342 Pfam SWIB/MDM2 domain 264 337 IPR003121 -
Rops1g01748 342 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 221 - -
Rops1g01748 342 MobiDBLite consensus disorder prediction 58 133 - -
Rops1g01748 342 MobiDBLite consensus disorder prediction 227 260 - -
Rops1g01748 342 MobiDBLite consensus disorder prediction 68 90 - -
Rops1g01748 342 ProSiteProfiles SWIB/MDM2 domain profile. 141 218 IPR003121 -
Rops1g01748 342 ProSiteProfiles SWIB/MDM2 domain profile. 260 339 IPR003121 -
Rops1g01748 342 SMART swib_2 142 221 IPR019835 -
Rops1g01748 342 SMART swib_2 261 342 IPR019835 -
Rops1g01748 342 Pfam DEK C terminal domain 2 55 IPR014876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01748 Rops-Chr1 36304613 36310962 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Rops1g01748 SWIB 3.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01748 K15223 - gmx:100786835 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01748 1 36304613 36310962 Rops1g01748 1 36304613 36310962 ECH