Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01725 ATGAGTTCAAGGAAGGGATACAGAAAAGGACACATGCTATTGGACGATGGCAGTGTCCATGGAAAAAAGTTCGGCAAGTCTAAAAATAAAGACAAAGATGAGCTTGATGGTTACAACTCCGATAACCATCCAAGGAAAAACATTGCCTTAACAATCGATGCACCACATTTGGATCCTCAAATGGCAGCAGATAATTCTCCATACGACGCTTCCCTCTCTCCACTATCAAAATCTCCATGGTCCTCTCACATGAACGACGAAAGTTCCACATCAAACGATGAAGCCCTCGTGGGTTCATTGATCCGTGAAGAAGGGCACATTTACTCTTTAGCAGCAAACAAGGATTTGTTGTACACAGGTTCCGACAGCAAGAACATTCGTGTTTGGAAAAACCAGAAGGAGTTCACAGGGTTCAAATCAAACAGTGGTTTGGTTAAATCCATTGTGATTGCAGGTGATAAAATCCTCACGGGTCACCAAGATGGAAGAATCCGCATTTGGAAAATCTCTGGTAAAAACGAACAACACCACAAGCGTGTTGCAACGTTGCCAACATTGAGGAACTACATCAAATGTTCAATGAAACCAAGCAACTACGTTGAAGTTAGACGACACCGTAACGTGCTTTGGATCAAACACTACGATGCAATCTCATGTCTCAGCTTAACGGAAGACCATTCCTTTATATACTCAGCTTCATGGGATAAAACCTTCAAAGTTTGGCGAGCCTCTAACTTCAAGTGTTTAGAATCCGTCACTGCTCATGATGATGCCGTTAACGCTTTGGTTGTTGGGTTCGAAGGGTTGGTCTTCACCGGCTCCGCCGACGGCACGGTGAAGATATGGCGGAGGGAGGTGCAGGGAAAGGGAACAAAACATCACTTCTCACTGACGCTTTTGAAACAAGAGTGTGCGGTTACGGCATTGGCGATAAACGAGGAAGGAACGTTTCTGTATAGTGCTTCCTCTGATGGGTTGGTGAATTATTGGGTTAAGAAAACGAATCTGGAACATGGTGGCGCTTTGAGGGGTCACAAGTTGGCGGTTTTGTGTTTGGCAACAGCGGGGAGTTTGGTGTTCAGTGGATCAGCTGATATGGCAATTTGTGTGTGGAAGAGGTCGTTGAATAATGATCACACGTGCATTTCAGTGTTGTCGGGACATACCGGACCGGTGAAGTGTCTGGCCGCCGAGAAGGATCCGGATGCGATGTTGAATGAGCGGCGGTGGATTTTGTATAGTGGGAGTTTGGATAAGTCGGTGAAGGTGTGGAAGGTGTCGGAGAATGCAGCACCTGGTGGTCAGCACAATAATAATAATAATAATAATCACCAGCCACGTCTTAGTGCTGAGTTTCTGAGAGTTTCGTCCTTGAGAAAAATGGGGTCTCGAAGATATTAG 1401 0.454 MSSRKGYRKGHMLLDDGSVHGKKFGKSKNKDKDELDGYNSDNHPRKNIALTIDAPHLDPQMAADNSPYDASLSPLSKSPWSSHMNDESSTSNDEALVGSLIREEGHIYSLAANKDLLYTGSDSKNIRVWKNQKEFTGFKSNSGLVKSIVIAGDKILTGHQDGRIRIWKISGKNEQHHKRVATLPTLRNYIKCSMKPSNYVEVRRHRNVLWIKHYDAISCLSLTEDHSFIYSASWDKTFKVWRASNFKCLESVTAHDDAVNALVVGFEGLVFTGSADGTVKIWRREVQGKGTKHHFSLTLLKQECAVTALAINEEGTFLYSASSDGLVNYWVKKTNLEHGGALRGHKLAVLCLATAGSLVFSGSADMAICVWKRSLNNDHTCISVLSGHTGPVKCLAAEKDPDAMLNERRWILYSGSLDKSVKVWKVSENAAPGGQHNNNNNNNHQPRLSAEFLRVSSLRKMGSRRY* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01725 466 MobiDBLite consensus disorder prediction 8 41 - -
Rops1g01725 466 FunFam BnaA09g28200D protein 200 287 - -
Rops1g01725 466 SMART WD40_4 131 168 IPR001680 GO:0005515
Rops1g01725 466 SMART WD40_4 292 331 IPR001680 GO:0005515
Rops1g01725 466 SMART WD40_4 93 130 IPR001680 GO:0005515
Rops1g01725 466 SMART WD40_4 378 425 IPR001680 GO:0005515
Rops1g01725 466 SMART WD40_4 335 372 IPR001680 GO:0005515
Rops1g01725 466 SMART WD40_4 245 283 IPR001680 GO:0005515
Rops1g01725 466 SMART WD40_4 204 242 IPR001680 GO:0005515
Rops1g01725 466 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 282 - -
Rops1g01725 466 Gene3D - 85 205 IPR015943 GO:0005515
Rops1g01725 466 Gene3D - 206 455 IPR015943 GO:0005515
Rops1g01725 466 MobiDBLite consensus disorder prediction 1 91 - -
Rops1g01725 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 330 IPR001680 GO:0005515
Rops1g01725 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 282 IPR001680 GO:0005515
Rops1g01725 466 Pfam WD domain, G-beta repeat 213 241 IPR001680 GO:0005515
Rops1g01725 466 Pfam WD domain, G-beta repeat 131 168 IPR001680 GO:0005515
Rops1g01725 466 Pfam WD domain, G-beta repeat 380 425 IPR001680 GO:0005515
Rops1g01725 466 Pfam WD domain, G-beta repeat 104 130 IPR001680 GO:0005515
Rops1g01725 466 Pfam WD domain, G-beta repeat 247 282 IPR001680 GO:0005515
Rops1g01725 466 SUPERFAMILY WD40 repeat-like 103 429 IPR036322 GO:0005515
Rops1g01725 466 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 68 430 IPR045182 -
Rops1g01725 466 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Rops1g01725 466 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Rops1g01725 466 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Rops1g01725 466 MobiDBLite consensus disorder prediction 429 448 - -
Rops1g01725 466 CDD WD40 104 425 - -
Rops1g01725 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 177 IPR001680 GO:0005515
Rops1g01725 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 251 IPR001680 GO:0005515
Rops1g01725 466 MobiDBLite consensus disorder prediction 66 91 - -
Rops1g01725 466 MobiDBLite consensus disorder prediction 431 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01725 Rops-Chr1 36069420 36071527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01725 210 426 Miscellaneous Gene Families AT5G08390 23.874 8.86e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01725 - - gmx:100778593 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01725 1 36069420 36071527 Rops1g01725 1 36069420 36071527 ECH