Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01702 ATGCCGATGCATCTGAGGAGGTTCTTTTGCGAGTTCAACAGACTAACCTTGCAACTGCAACTGCAAGTTCGTTCCTTTACCCGTCGTCGTGACCCTTTTCCCACTAAAGTTACCCATTACCTCAACCGTGCAAAACTCATTGACTCCATTCGACTCACACTTCGCTCCAATAGCCCCGACTCTTCACTTCCCACTCTTGTAAACCACCGTCTCCTTGACTCTTTCGTGGTCACTCATGCCCTGCGTTCTGCCCCCTCTGCCGATTCTGCTCTCTCCCTTGTACATGCCCTCGAGAAAAGTTCTCATTTTTCACATACCCAAAACACCGTCCATGCCCTTGCCACTGTGCTTGCCAGGTCAGGTCGATGTGCTGAACTCAAATCCCTCATTGATGCTATCCAAGCTAAACAATTCGGCAATGTGAAGATCAGCTTTATGAATCTCTTACAGTGGTATGCTGCAGCTAGGGATCTTGACTCTGTTCTTGAGGTCTGGGATCAGTATAGACTTGCCAATAACCATGTATGCACTGAATCTTATAACATTGTTATGGCTCTTTATGTGCAAATGGGAAAAGACTCTGAGGTTGTTCAAGTTTTTCACAAGATGGTTGATGAAGGGTCACTTCCTAATTGCAGAAGCTACACTTTAATAATCGAGCACCTTGTGAAATCTAATAAATTATCTGAAGCTATGGAGGTCTTTAACATGTTGCCTTTGATGAGGATCAAACGCACCTTGAAACAGTACAACGTTCTGATTGAAGGTTTTGTTGGTAGCAAACGGTTTGATGAAGTCAGAATTTTAGTTAATGAAATGCTAGTTGATGGAATATTGCCCAGTCGAGCCATGAGTTTGTCACTGCAGCAGATGCATGAAGAAGGATTTCTTAAGGAAACAGATGAATTATTTAGAGAAATTTTGCCAGATGAAAGAATCAAGAATCTAAGTTATTCTATTGATAGCAGTGATGAGGATGAGAATAATGACGAGGATGAGAATGAGAAGGAGAATCATGCTTGTCAATGTGATCATATTGATGGGATACACTTAAAACCGTGGCTGGACCCGCGGGCTTTGGCTAGTGCATTACAGAATTGGAGTCCTGATGAGGTTTCAGCACTAGAGGGTGCAAACTTTGTGTGGACAACCAGGCTGGTTTGCAAGGTACTTAGAAATTTCAATTCACCAGATGCTGCATGGAATTTCTTCTGCTGGGTTGCTTATAAACCTGGATTTACGCACAACATATACACAGTACAAAGAATCATGACCCTTCTAGCACGCCATGGACGTACTGAATTGGTTGATAGACTAATCTCCAAGATCAGAATGGAGGGAATGAGACTACCATTCAGCACCATCAGGCTAATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTCTGAAGGTTTTCAATGAGGATCGAATACTTTGTGGGCCCATATCAAATGTTAATTTGATACTTCTGTATTCCTCTCTTCTAAGAACATTAACCAAGTGTGGAAGGAATTCTGATGCCCTGGAGATGCTTGATGAGATGATTTTAAATGGTATTTGCCCAGATATTCAAACATTTTCCGGTCTAATGCACTATTTTTCACACCTTGGAGACATTAAAACCGTGCAGAAGCTCTTTTCAATGGTCAGGCAGAGTGGTTTAGAGCCAGATGCTTATCTGTATAAGGTACTAATCGAAGGTTATTGCGATTCAAAAAGAGCTGCACTGGCATGGAGGCTATTTGAAGACATGAAGAATTCAGGTTTGGTGCCTGACTCTGCCACCAAAGAGTTGCTTGTGAAGAGCCTGTGGAAAGAAGGGAGACGGAGAGAGGCTGCAGCAGTGGAAGAGAGCTGTGAGGAAATAAATGCAATCCTTCCACCTGCATTGCGTGGTCATGTATGGACTGTCAGCTCTAAGGATCTCACAAGAGTTTATAATATTTATTCAAATTGTTTTGCTTCAAACAGTGGCTAG 1986 0.4245 MPMHLRRFFCEFNRLTLQLQLQVRSFTRRRDPFPTKVTHYLNRAKLIDSIRLTLRSNSPDSSLPTLVNHRLLDSFVVTHALRSAPSADSALSLVHALEKSSHFSHTQNTVHALATVLARSGRCAELKSLIDAIQAKQFGNVKISFMNLLQWYAAARDLDSVLEVWDQYRLANNHVCTESYNIVMALYVQMGKDSEVVQVFHKMVDEGSLPNCRSYTLIIEHLVKSNKLSEAMEVFNMLPLMRIKRTLKQYNVLIEGFVGSKRFDEVRILVNEMLVDGILPSRAMSLSLQQMHEEGFLKETDELFREILPDERIKNLSYSIDSSDEDENNDEDENEKENHACQCDHIDGIHLKPWLDPRALASALQNWSPDEVSALEGANFVWTTRLVCKVLRNFNSPDAAWNFFCWVAYKPGFTHNIYTVQRIMTLLARHGRTELVDRLISKIRMEGMRLPFSTIRLIIDFYGISKNADAALKVFNEDRILCGPISNVNLILLYSSLLRTLTKCGRNSDALEMLDEMILNGICPDIQTFSGLMHYFSHLGDIKTVQKLFSMVRQSGLEPDAYLYKVLIEGYCDSKRAALAWRLFEDMKNSGLVPDSATKELLVKSLWKEGRRREAAAVEESCEEINAILPPALRGHVWTVSSKDLTRVYNIYSNCFASNSG* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01702 661 MobiDBLite consensus disorder prediction 319 338 - -
Rops1g01702 661 NCBIfam pentatricopeptide repeat 179 212 IPR002885 -
Rops1g01702 661 NCBIfam pentatricopeptide repeat 250 281 IPR002885 -
Rops1g01702 661 NCBIfam pentatricopeptide repeat 494 526 IPR002885 -
Rops1g01702 661 NCBIfam pentatricopeptide repeat 563 596 IPR002885 -
Rops1g01702 661 Pfam Pentatricopeptide repeat domain 199 259 IPR002885 -
Rops1g01702 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Rops1g01702 661 Gene3D Tetratricopeptide repeat domain 78 345 IPR011990 GO:0005515
Rops1g01702 661 PANTHER OS01G0167750 PROTEIN 3 659 IPR044175 -
Rops1g01702 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Rops1g01702 661 Pfam PPR repeat family 564 606 IPR002885 -
Rops1g01702 661 Gene3D Tetratricopeptide repeat domain 364 483 IPR011990 GO:0005515
Rops1g01702 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Rops1g01702 661 Gene3D Tetratricopeptide repeat domain 488 659 IPR011990 GO:0005515
Rops1g01702 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Rops1g01702 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Rops1g01702 661 Pfam PPR repeat 494 522 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01702 487 630 Glycosyltransferase AT1G05670 28.000 3.04e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01702 - - cam:101514749 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01702 1 35722455 35724634 Rops1g01702 1 35722455 35724634 ECH