Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01653 ATGTGGCGGTGCGTCGCTCGTGGACTCCGCGTACCATCTTCCAACACCAGATCCACTCCCAATAACTTACTTAGATCTCACATTTCTAGATTCTTCTCTAGTGGGGTGAACTCCTCGTACACTGTTGTGGATCATACTTACGATGCAGTTGTGGTAGGTGCTGGTGGCGCAGGGTTGAGAGCTGCTATTGGACTTTCAGAACATGGATTCAATACTGCTTGCATTACCAAGCTCTTCCCAACTCGTTCCCACACTGTTGCAGCTCAGGGTGGCATCAATGCCGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAATATATGTGTAGGGAAGCCCCAAAAGCGGTCATTGAGCTAGAGAATTATGGATTACCATTTTCCCGAACAGAGGATGGAAGAATATATCAGCGTGCATTTGGTGGTCAAAGCTTAAACTTTGGAAAAGGTGGTCAAGCTTACCGATGTGCATGTGCAGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGCCAGGCCATGAAACATAATACCCAGTTTTTTGTGGAATATTTTGCCTTGGATCTTTTAATGAATAGTGATGGCAGTTGCCAAGGAGTAATTGCCTTAAATATGGAGGATGGAACACTACATCGTTTCCAAGCTGCTTCAACAATTTTGGCCACAGGGGGTTATGGTAGAGCATACTTTTCTGCAACCTCAGCACATACATGCACGGGAGATGGCACTGCCATGGTTGCACGTGCTGGGCTCCCCCTTGAGGATTTAGAGTTTGTGCAATTTCACCCAACAGGTATATATGGAGCTGGTTGCCTCATCACTGAAGGTTCTCGTGGTGAAGGTGGAATTCTCAGGAATAGTGAGGGCGAGAGATTTATGGAACGATATGCTCCTACTGCAAAGGATCTTGCATCCAGAGATGTAGTTTCAAGATCAATGACTATGGAAATCCGGGAAGGTCGTGGTGTAGGACCCCTGAAAGATCACATCTATCTCCACTTGAATCACCTACCCCCTGATGTGCTCAAGGAGAGACTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACGAAGGAACCCATTCCTGTTTTGCCAACTGTGCATTATAACATGGGTGGTATTCCCACAAACCATCATGGAGAGGTGGTTACCATTAAAGGCGACAATCCAGATGCAGTAGTTCCTGGATTGATGGCTGCTGGGGAAACAGCCTGTGCATCAGTTCATGGCGCCAATAGGCTTGGTGCAAATTCACTTCTGGATATTGTTGTTTTTGGTAGAGCTTGTGCAAACAGAGTTGCAGAAATCCATAGGCCAGGAGAGAAACAAAAGCCTTTAGAAAAGGATGCTGGTCAGAAAACAATTGCATGGCTGGACAAATTGAGAAATTCAAATGGCTCATTGCCTACTGCAAAAATTCGTTTGAATATGCAACGAATTATGCAAAACAATGCTGCTGTATTCCGTACACAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAGCATGGGAGAGCTTCCATGATGTCAAGTTGGAGGACCGGACTTTAATATGGAACTCCGATTTGATTGAGACTGTTGAGTTGGAAAATCTTCTGATAAATGCCTGCATCACAATGCACTCTGCTGAAGCCAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAGGACTTCACGAAAAGAGATGATGAAAACTGGATGAAACACACTGTGGGATTCTGGGAGAACGAGAAGGTCCGGTTGGATTACAGGCCAGTGCATATGAATACATTGGATGACGAGGTTGAATCATTCCCTCCTAAGGCTCGTGTGTATTAA 1896 0.4531 MWRCVARGLRVPSSNTRSTPNNLLRSHISRFFSSGVNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGTAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDNPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEIHRPGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTAKIRLNMQRIMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLEDRTLIWNSDLIETVELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTVGFWENEKVRLDYRPVHMNTLDDEVESFPPKARVY* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01653 631 SUPERFAMILY FAD/NAD(P)-binding domain 39 467 IPR036188 -
Rops1g01653 631 Gene3D - 471 581 - -
Rops1g01653 631 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 48 631 IPR014006 GO:0016627|GO:0022900|GO:0050660
Rops1g01653 631 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 490 631 IPR037099 GO:0016491
Rops1g01653 631 Pfam Fumarate reductase flavoprotein C-term 500 631 IPR015939 GO:0016491
Rops1g01653 631 PIRSF SDHA_APRA_LASPO 37 621 - -
Rops1g01653 631 NCBIfam succinate dehydrogenase flavoprotein subunit 45 631 IPR011281 GO:0006099|GO:0016627|GO:0050660
Rops1g01653 631 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 286 389 - -
Rops1g01653 631 Pfam FAD binding domain 48 444 IPR003953 -
Rops1g01653 631 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 82 91 IPR003952 GO:0016491
Rops1g01653 631 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 276 394 IPR027477 -
Rops1g01653 631 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 390 455 - -
Rops1g01653 631 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 583 631 - -
Rops1g01653 631 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 470 586 - -
Rops1g01653 631 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 286 389 IPR027477 -
Rops1g01653 631 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 36 261 - -
Rops1g01653 631 Gene3D - 48 455 IPR036188 -
Rops1g01653 631 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 29 631 IPR030664 -
Rops1g01653 631 Gene3D succinate dehydrogenase protein domain 582 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01653 Rops-Chr1 34973922 34981820 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01653 K00234 - gmx:100802169 1211.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01653 1 34973922 34981820 Rops1g01653 1 34973922 34981820 ECH
Rops1g01653 1 34973922 34981820 Rops2g03373 2 62038929 62047258 PCT