Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01650 ATGGTGCACAGCGCTTACGATTGTTTGGAACTGGTGGCCGATTGTCCATCGAAGATCGAAGCCATCGAATCGTACGGGTCGAAGCTTCTGGTCGGGTGCTCCGATGGATCTCTTCGAATATACACGCCGGAAATTGAATCCTCCGACGGTTCCAAACCTTACGTGTTGGAGAAGAATCTGGTTGGATTTGCGAAGAAGCCTGTGGTTTCAATGCAAGTGGTGGAATCCAGAGAGCTCCTTTTATCGCTATCCGAATCCATCGCCTTCCACAGACTCCCTACTTTGGAAACCATAGCAGTGATCACCAAAGCCAAGGGCGCCAACGTCTTTTGCTGGGATGATCGAAGAGGATTCCTCTGCTTCGCAAGGCAAAAGCGCGTTTGCATTTTCAGGCACGACGGTGGTAGAGGATTTGTGGAGGTGAAAGAGTTTGGTGTAGCAGACATGGTGAAGTCGATGTGTTGGTGTGGAGAGAATATATGTTTAGGGATTAGAAGAGAGTATGTGATTTTGAATGCTACAAATGGCGCTTTGTCTGAGGTTTTTACTTCTGGAAGACTACCGCCGCCTTTAGTAGTTTCTCTTCCCTCCGGTGAGCTTCTTCTTGGAAAGGAGAATATTGGGGTATTTGTGGACCAAAATGGGAAGCTTCTTCCCGAAGGTAGGATTTGTTGGTCGGAGGCTCCTGTGGAAGTTGTGATTCAGAAGCCGTATGCTATAGCTTTGCTGCCCAGATATGTGGAGATTCGATCTCTCCGAGATCCTTATCCGCTGATACAAACTATTGTTCTTCGTAATGTTCGCCACCTTTGCAAAAGCAATAATTCGGTGATACTTGCTTTGGATAACTCTATTCATGGCCTCTTCCCTGTTCCCCTTGGAGCCCAGATTGTCCAGTTAACAGCTTCTGGCAACTTTGAAGAGGCCTTGTCATTGTGCAAGCTCCTTCCACCTGAAGAGTCAAGTCTGCGTGCTGCAAAGGAGGGATCAATACATATAAGATATGCCCACTATCTATTTGAAAACGGGAACTATGAGGAGGCTATGGAACATTTTCTGGCATCTCAAGTAGATATAACCTATGTGCTTTCTCTGTATCCATCCATTATCCTTCCAAAGACAACTATTGTTCATGAACTGGAGAAGTTGGACATATACGGGGATGCTTCCTATCTCTCCAGAGCTTCTTCAGGTTTGTCGGATGATATGGAACCCTCGTCGACATCTCATATGTCAGAAGCTGACGAGAATGCAGCACTTGAATCCAAAAAAATGAACCATAATACGCTTATGGCTCTCATAAAATATTTACAGAAGAAGAGATATAGTTTTATTGAGAAAGCCACTGCAGAGGGAACTGAAGAAGTTGTTTTAGATGCAGTTGGGGATAACTTTGCATCCTACAATAGGTTTAAGAAAACAAACAAGGGACGTGGTAATATACTTGTTAGTTCCGGAGCTCGGGAGATGGCATCAATATTGGATACTGCTCTACTCCAAGCATTGCTTCTTACTGGACAATCTTCAGCGGCTTTAGAATTACTGAGAGGTGTTAACTACTGTGATTTAAAAATATGTGAAGAAATACTTCAAAAAGGCAACCATAATGTTGCTTTATTAGAACTTTACAAGTGCAACTCATTGCACCGGGAAGCTCTTGAACTTCTTCACAAATTGGTGGAAGAGTCAAGGTCTAGCCAGTCTGAAATTACCCAAAGGTTCAAGCCTGAGGACATTATTGAGTATCTCAAGCCGCTATGTGGGACAGACCCCATGCTGGTTCTAGAGTTCTCAATGCTTGTTCTTGAAAGCTGTCCATCCCAAACTATTGAGCTCTTTTTGTCCGGAAATATTCCAGCAGATATGGTGAACTCATATTTGAAGCAGCATTCTCCAAACATGCAAGCTAGGTACTTGGAGCTCATGCTTGCAATGAATGAGAATGCCATATCTGGCAATTTGCAAAATGAAATGGTAAACATCTATCTTTCTGAAGTACTTGATTGGCATGCTGATTTAAGTGCTCAACAAAATTGGGATGAGAAAGCTTATTCCCCAACAAGGAAAAAATTATTGTCTGCCTTAGAGGGTATATCAGGATACAATCCAGAGGCTCTGTTGAAACGTCTTCCACCAGATGCTTTATATGAGGAGCGTGCAATATTGTTGGGAAAAATGAACCAACATGAATTGGCATTATCTTTGTATGTTCATAAGCTTCATGTTCCAGAACTGGCAGTGGCTTATTGTGATCGAGTGTATGAGTCTACACATCAGCCATCTGTAAAACATTCCAGCAACATATACCTAATGCTTCTGCAAATCTACTTGAATCCTCAAAGGACCACAGCGAGCTTTGAAAAGAGAATTACAAATCTATCATCCCTGCAGAATACAACCATTCCAAAAGTTAGTTCAACAACATCAATAAAAAGTAAAGGAGGCCGAGGAATGAAGAAAATTGCTGAGATAGAGGGTGCAGAGGACACAAAAGTTAGTTTGAGCAGCACCGATAGCAGCAGGAGTGATGGTGATGTGGATGAATTTAGTGAGGGTGGTTCTACTATCATGCTTGATGAGGTCCTTGATTTGTTGAGCCGCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTCAAACTTTTACCAAGAGAGACTAAATTACAGGACTTGCTTTCATTTCTTGGACCTCTTCTAAGAAAATCTAGTGAAATGTACCGAAATTGTTCAGTGATCAAGAGCTTGAGACAGAGTGAGAACCTTCAGGTGAGAGATGAACTCTATAGTCAGAGGAAAGCTGTTGTGAAGATAACCAGTGACAGCATGTGTTCTCTGTGCCATAAGAAAATAGGGACTAGTGTTTTTGCAGTCTACCCCAATGGGAGCACTCTGGTGCACTTTGTCTGTTTCAGAGATTCTCAAAATATGAAAGCAGTGGCCAAAGGGTCTCAATTGAGGAAGCGATCATGA 2967 0.4291 MVHSAYDCLELVADCPSKIEAIESYGSKLLVGCSDGSLRIYTPEIESSDGSKPYVLEKNLVGFAKKPVVSMQVVESRELLLSLSESIAFHRLPTLETIAVITKAKGANVFCWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKEFGVADMVKSMCWCGENICLGIRREYVILNATNGALSEVFTSGRLPPPLVVSLPSGELLLGKENIGVFVDQNGKLLPEGRICWSEAPVEVVIQKPYAIALLPRYVEIRSLRDPYPLIQTIVLRNVRHLCKSNNSVILALDNSIHGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEESSLRAAKEGSIHIRYAHYLFENGNYEEAMEHFLASQVDITYVLSLYPSIILPKTTIVHELEKLDIYGDASYLSRASSGLSDDMEPSSTSHMSEADENAALESKKMNHNTLMALIKYLQKKRYSFIEKATAEGTEEVVLDAVGDNFASYNRFKKTNKGRGNILVSSGAREMASILDTALLQALLLTGQSSAALELLRGVNYCDLKICEEILQKGNHNVALLELYKCNSLHREALELLHKLVEESRSSQSEITQRFKPEDIIEYLKPLCGTDPMLVLEFSMLVLESCPSQTIELFLSGNIPADMVNSYLKQHSPNMQARYLELMLAMNENAISGNLQNEMVNIYLSEVLDWHADLSAQQNWDEKAYSPTRKKLLSALEGISGYNPEALLKRLPPDALYEERAILLGKMNQHELALSLYVHKLHVPELAVAYCDRVYESTHQPSVKHSSNIYLMLLQIYLNPQRTTASFEKRITNLSSLQNTTIPKVSSTTSIKSKGGRGMKKIAEIEGAEDTKVSLSSTDSSRSDGDVDEFSEGGSTIMLDEVLDLLSRRWDRINGAQALKLLPRETKLQDLLSFLGPLLRKSSEMYRNCSVIKSLRQSENLQVRDELYSQRKAVVKITSDSMCSLCHKKIGTSVFAVYPNGSTLVHFVCFRDSQNMKAVAKGSQLRKRS* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01650 988 MobiDBLite consensus disorder prediction 827 848 - -
Rops1g01650 988 Pfam CNH domain 26 272 IPR001180 -
Rops1g01650 988 Pfam Vacuolar sorting protein 39 domain 1 494 602 IPR019452 -
Rops1g01650 988 PANTHER CNH DOMAIN CONTAINING 1 976 IPR032914 GO:0016192
Rops1g01650 988 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 597 781 IPR000547 GO:0006886|GO:0016192
Rops1g01650 988 Pfam Region in Clathrin and VPS 622 753 IPR000547 GO:0006886|GO:0016192
Rops1g01650 988 Pfam Vacuolar sorting protein 39 domain 2 862 970 IPR019453 -
Rops1g01650 988 ProSiteProfiles Citron homology (CNH) domain profile. 16 277 IPR001180 -
Rops1g01650 988 SUPERFAMILY WD40 repeat-like 22 171 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01650 Rops-Chr1 34914895 34921571 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01650 K20183 - gmx:100805342 1709.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01650 1 34914895 34921571 Rops1g01650 1 34914895 34921571 ECH