Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01642 ATGGCCGCCGCTAGGTTAACCTCATGCGTGGCCGTTACAGCTGCTGCGGTGGCTTCCATGTCCACGCTCTCCGATCGCGCGTACGCCGACTCTCCCTTTCGGTTCCCTTTCTTCTCTTCTTCACCTTCCAATTCACCTTCGCCGCCGCCAAACCAGTCTTCCGACACCAATTCGGATCCTCCGGCGTCCGATGAACCAAACAAGTCGAGTTTTGATCCGGAATCGTTAGAAAGAGGTGCAAAAGCTCTCCGTGAAATCAATAATTCTCCCTCCGCCAAACAGGTGTTTGATTTAATGCGAAAACAGGAACAAACTCGCCTTGCTGAGTTAGATGCTGAGAAAGTTCATTATGAACTTATTCAGGCTCAAAATGATATTGAAAGGCAGCGGAAAATGGCAGAAGAACAACGGAATCTAATACAAGATCAAGCACAGAGACAGGCCCAGGTGCTGCGATATGAAGATGAATTGGCAAGGAAAAGATTGCAGGCAGATCATGAAGCTCAAAGGCAACATAATGTTGAATTGGTCAAGATGCAAGAGCAGTCTTCTGTAAGAAAGGAGCAGGCAAGACAGGCTACTGAAGAACAGATCCAATCTCAGCAGCGTCAGACTGAAAGAGAGAGAGCTGAAATAGAAAGAGAAACCATTAGAGTTAAGGCAATGGCAGAGGCTGAAGGCCGAGCCCATGAAGCAAAATTGACTGAGGATCATAAAAGGAGAATGCTTATAGAACGAATGCAAGGTGAAAGAGATAAATGGCTTGCTGCAATTAACACAACTTTTAGTCATATTGAAGGCGGTCTAAGGGTCTTGTTGACTGATAGGGACAAATTGCTTATGACTGTTGGAGGAGCTACTGCATTAGCTGCAGGAGTATATACAACTAGAGAAGGTGCTAAAGTTACATGGGGCTATATTAATCGGATTTTGGGGCAGCCATCATTGATCCGGGAATCATCCATGGCAAAGTTTCCAGGGTCAAGGATCATATCTCAAGCCAAAAATAAAGTTTTAAATTATGGTACCTTGGCCAGGGCAGAAAAGCCTATCGGGAATCAAAATGGTCTTGGAAATGTAATTCTTCATCCATCATTGCAGAGAAGAATAGAGCATCTTGCGCGGGCAACATCAAATACTAAGGCCCATCAGGCACCATTTCGTAACATGCTTTTTTATGGGCCTCCTGGGACTGGTAAAACCATGGTTGCTAGGGAAATAGCTAGAAAATCGGGTTTGGATTATGCCATGATGACTGGAGGAGATGTTGCACCACTGGGCCCACAGGCTGTTACCAAAATTCATGAGATATTTGACTGGGCCAAGAAATCAAGAAAAGGCCTATTGCTTTTTATTGATGAGGCAGATGCTTTCCTTTGCGAGCGTAATAGCTCACATATGAGTGAAGCTCAACGAAGTGCTCTAAACGCGTTGCTCTTCAGAACCGGCGATCAGTCCAGAGACATAGTACTTGTCCTTGCCACAAACAGACCTGGAGATCTTGATAGTGCAGTTACTGATCGCATTGATGAAGTGATCGAATTCCCACTTCCAGGAGAGGAGGAACGTCTAAAGTTAATAAAGCTCTATTTGAACAAGTATCTATGCAATGACAATAATGGCTCCAAGGGGGGTTTCTTGCTGAAGAAACAGCCCCAAAAGATTACTATAAAAGATTTATCCGAAGATGTGTTCAGAGAGGCGGCCAAGAAAACAGAGGGATTTTCTGGTCGTGAGATAGCCAAACTCATGGCCAGTGTCCAAGCTGCTGTCTATGGGCGCCCAGACTGCGTCTTGGATTCTCAGTTGTTTAAAGAAATTGTGGATTACAAGGTGGTGGAGCATCATCAACGATTAAAACTGGCAGAAGAAGGGGGCTTGCCTGACCAAATGCAACAACTTGCTTGA 1908 0.4507 MAAARLTSCVAVTAAAVASMSTLSDRAYADSPFRFPFFSSSPSNSPSPPPNQSSDTNSDPPASDEPNKSSFDPESLERGAKALREINNSPSAKQVFDLMRKQEQTRLAELDAEKVHYELIQAQNDIERQRKMAEEQRNLIQDQAQRQAQVLRYEDELARKRLQADHEAQRQHNVELVKMQEQSSVRKEQARQATEEQIQSQQRQTERERAEIERETIRVKAMAEAEGRAHEAKLTEDHKRRMLIERMQGERDKWLAAINTTFSHIEGGLRVLLTDRDKLLMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGSRIISQAKNKVLNYGTLARAEKPIGNQNGLGNVILHPSLQRRIEHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGPQAVTKIHEIFDWAKKSRKGLLLFIDEADAFLCERNSSHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERLKLIKLYLNKYLCNDNNGSKGGFLLKKQPQKITIKDLSEDVFREAAKKTEGFSGREIAKLMASVQAAVYGRPDCVLDSQLFKEIVDYKVVEHHQRLKLAEEGGLPDQMQQLA* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01642 635 Pfam ATPase family associated with various cellular activities (AAA) 390 517 IPR003959 GO:0005524|GO:0016887
Rops1g01642 635 MobiDBLite consensus disorder prediction 36 76 - -
Rops1g01642 635 Gene3D - 345 537 IPR027417 -
Rops1g01642 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 613 IPR027417 -
Rops1g01642 635 PANTHER PUTATIVE ATP-ASE 20 624 - -
Rops1g01642 635 Coils Coil 119 146 - -
Rops1g01642 635 ProSitePatterns AAA-protein family signature. 489 508 IPR003960 GO:0005524|GO:0016887
Rops1g01642 635 Pfam ATPase family AAA domain-containing protein 3, N-terminal 54 318 IPR021911 -
Rops1g01642 635 FunFam ATPase family AAA domain-containing protein 3 344 534 - -
Rops1g01642 635 SMART AAA_5 386 519 IPR003593 GO:0016887
Rops1g01642 635 MobiDBLite consensus disorder prediction 175 211 - -
Rops1g01642 635 Coils Coil 184 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01642 Rops-Chr1 34760028 34766237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01642 366 593 Miscellaneous Gene Families AT5G53170 29.114 4.23e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01642 K17681 - gmx:100777755 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01642 1 34760028 34766237 Rops1g01642 1 34760028 34766237 ECH