Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01609 ATGTCTGGATCTCTATCTCCAACCGGTTCTTTGAAGAAGAAAGCAATTAATGCCTCAAACATGTTAAGGAATTCATTGACGAGAAAAGGTAGGCGAAGTAGCAAGGTCATGTCCGTTGAAATTGAGGATGTCCATGATGCTGAGGAGTTAAAAGCGGTTGACGAGTTTCGCCAAGCTCTTATATTGGATGAACTTCTCCCTGATAAACACGATGATTATCATATGATGCTAAGATTCCTGAAGGCCAGGAAATTTGATGTTGAGAAAACAAAGCAAATGTGGTCTGACATGCTCAAATGGAGGAAAGAATTTGGTGCCGACACTATTATGGAGGACTTTGAGTTCAAGGAAATTGACGAAGTCTTAAAATATTATCCCCACGGACATCATGGAATAGACAAAGATGGACGACCTGTGTACATAGAGAGAATTGGACAAGTTGATGCCAACAAGCTGATGCAAGTCACAACCATGGATCGCTATATCAAATACCATGTAAAGGAGTTTGAGAGGACATTTGATGTTAAGTTTGCAGCTTGTTCCATTGCTGCTAAGAAGCACATCGATCAAAGTACAAGTATCCTGGATGTGCAGGGAGTGGGCCTTACAAGCTTCACCAAAAATGCTAGGGAACTTCTCACTCGCATTCAGAAGATTGATGGTGACAACTATCCAGAGACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTTAGAATGCTGTGGAATACCGTAAAATCCTTCCTTGATCCTAAAACTACAGCAAAAATCCATGTTCTTGGCAACAAGTATGAGAGTAAATTGCTTGAAGTAATTGATGCAAGTGAGTTGCCTGAATTTTTAGGAGGTACCTGTAAATGTGGTGATCAAGGAGGCTGTATGCGCTCTGATAAGGGCCCATGGAATGATGTAGAAATAATGAAGCTGGTTCAGAATGGTGATCACAAATGTTCAAGAAAACCCAAGTCTCATGTGGAGGAAGAGAAAGTAACTTCTGAGGAACAAAAGACTTCCAAGGTGGAGGAGAATCCCACCCCACAGGTTTCTCCAGTTTGTGATGATGTCCCTGCCACTAAAGCTTCCAAGCACGAGGACTCAATCCCGGTGGATGATAAAACTGCTTTGAATAAAGTTGACGAGGTTGATAAAACTGCTATGAAAAAAGTTGATGAGGTTGTCGCAACTGCAAATGAGTTTGTGACAATGATGAAACGCATGGCTGAGTTGGAACAGAAAATGACCAACATGAATCATCAACCTGCTGTCATGCCACCTGAGAAGGAGGAAATGCTGAATGCTACTATAAATCGAGCAGATGACTTGGAGAAACAACTTGTAGCCACCAAGAAGGCTTTGGAGGATTCACTTGCTAAGCAACAGGAGATTTCAGCTTATATTGAGAAAAAGAAGAAGAAGAAGAAGAAGTTTTTCTTCTTTTAA 1446 0.4122 MSGSLSPTGSLKKKAINASNMLRNSLTRKGRRSSKVMSVEIEDVHDAEELKAVDEFRQALILDELLPDKHDDYHMMLRFLKARKFDVEKTKQMWSDMLKWRKEFGADTIMEDFEFKEIDEVLKYYPHGHHGIDKDGRPVYIERIGQVDANKLMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTSILDVQGVGLTSFTKNARELLTRIQKIDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYESKLLEVIDASELPEFLGGTCKCGDQGGCMRSDKGPWNDVEIMKLVQNGDHKCSRKPKSHVEEEKVTSEEQKTSKVEENPTPQVSPVCDDVPATKASKHEDSIPVDDKTALNKVDEVDKTAMKKVDEVVATANEFVTMMKRMAELEQKMTNMNHQPAVMPPEKEEMLNATINRADDLEKQLVATKKALEDSLAKQQEISAYIEKKKKKKKKFFFF* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01609 481 Gene3D - 9 104 - -
Rops1g01609 481 FunFam SEC14 cytosolic factor 105 317 - -
Rops1g01609 481 SMART CRAL_TRIO_N_2 72 97 IPR011074 -
Rops1g01609 481 MobiDBLite consensus disorder prediction 317 342 - -
Rops1g01609 481 Pfam CRAL/TRIO domain 123 285 IPR001251 -
Rops1g01609 481 CDD SEC14 118 286 IPR001251 -
Rops1g01609 481 Coils Coil 433 460 - -
Rops1g01609 481 PRINTS Cellular retinaldehyde-binding protein signature 75 97 - -
Rops1g01609 481 PRINTS Cellular retinaldehyde-binding protein signature 244 263 - -
Rops1g01609 481 PRINTS Cellular retinaldehyde-binding protein signature 277 286 - -
Rops1g01609 481 Gene3D - 105 317 IPR036865 -
Rops1g01609 481 Pfam CRAL/TRIO, N-terminal domain 68 96 IPR011074 -
Rops1g01609 481 SUPERFAMILY CRAL/TRIO domain 117 313 IPR036865 -
Rops1g01609 481 SMART sec14_4 117 288 IPR001251 -
Rops1g01609 481 Coils Coil 401 421 - -
Rops1g01609 481 SUPERFAMILY CRAL/TRIO N-terminal domain 45 113 IPR036273 -
Rops1g01609 481 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 9 472 - -
Rops1g01609 481 MobiDBLite consensus disorder prediction 317 355 - -
Rops1g01609 481 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 117 291 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01609 Rops-Chr1 34333713 34340953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01609 51 282 Acyl Lipid Metabolism Gene Families AT5G47730 28.216 5.73e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01609 K26544 - gmx:100527533 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01609 1 34333713 34340953 Rops1g01609 1 34333713 34340953 ECH