Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01594 ATGCTTGGCGCCACAAAACGTGCAGTTGCATTGATCCCTCGAAGATTACGATCAGTGCGGCAAATCCATGGAGATGAGACTTTGCATTTTTACAAGAGCAGAGGCCAACACATTCTCATGAATCCTCGAATTCTGGACACCATCGTTCGGAAATCCGCAATTAACCCCACCGACACCGTCCTCGAGATTGGACCCGGCACCGGCAACCTCACCCTCAAGCTACTAGAAGCCGCTCACCACGTTGTAGCCATCGAAATCGACCACCGCATGGTCGAGGTTCTCGAGAATCGCACCCTCCAACGCGACCTCCGCGGTAAGCTCAGTGTCATAACAAAAGATGCATTGAGAACGGAGTTCCCGAAGTTTGATCTCGTGGTGGCTAACATTCCTTACGGGATATCTTCCCCCTTGGTGATTAAACTGGTGTATGGAACGACACCGTTTCGGAGTGCCACTCTTCTGCTTCAGAAAGAGTTTGCTCGAAGGTTATTGGCCAATCCCGGTGACTCTGAGTTTAACCGTTTGGCCGTTAATGTTAAACTTCTTGCTGACGTGGAGTTTGTTATGGATGTTAGTAAGAGGGACTTTGTCCCATGCCCTAAGGTTGATTCCTCAGTGGTCATAATCCGTCCTAAGCCTCATGTCCCCAACGTGGATCTCAATCAGTGGAGGGCTTTCACGAGAACATGTTTTAGTAACAAGAACAAGACTCTCGGTGCCACGTTTAAGAATAAGAGGAAAGTTTCCGAGTTATTCCATGTCTCCAATGTCTCTGGTTTAGTTCAACGAGATGAAGGAGGGGTATCGTCGTTTAAGGAAAAGATAATTGGAGTGCTTAGAGAGGGAGGGTTTGAAGACAAAAGGCCTTGGAAACTTTCTCTAGAGGAATTACTGCATTTGCTCTCTTTGTTCAATCAAGCTGCCATATATTTCGATCACCCTGGAAAGCTCATGAATGAAGATACACTTGAGGTTGATGATGGTGACTAG 990 0.4717 MLGATKRAVALIPRRLRSVRQIHGDETLHFYKSRGQHILMNPRILDTIVRKSAINPTDTVLEIGPGTGNLTLKLLEAAHHVVAIEIDHRMVEVLENRTLQRDLRGKLSVITKDALRTEFPKFDLVVANIPYGISSPLVIKLVYGTTPFRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLLADVEFVMDVSKRDFVPCPKVDSSVVIIRPKPHVPNVDLNQWRAFTRTCFSNKNKTLGATFKNKRKVSELFHVSNVSGLVQRDEGGVSSFKEKIIGVLREGGFEDKRPWKLSLEELLHLLSLFNQAAIYFDHPGKLMNEDTLEVDDGD* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01594 329 Pfam Ribosomal RNA adenine dimethylase 31 250 IPR001737 -
Rops1g01594 329 PANTHER DIMETHYLADENOSINE TRANSFERASE 25 306 IPR001737 -
Rops1g01594 329 FunFam rRNA adenine N(6)-methyltransferase 30 214 - -
Rops1g01594 329 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 30 302 IPR011530 GO:0000179|GO:0006364
Rops1g01594 329 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 26 306 IPR029063 -
Rops1g01594 329 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 30 308 IPR001737 -
Rops1g01594 329 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 60 87 IPR020596 GO:0000154|GO:0000179|GO:0008649
Rops1g01594 329 CDD AdoMet_MTases 59 138 - -
Rops1g01594 329 Gene3D Vaccinia Virus protein VP39 30 214 IPR029063 -
Rops1g01594 329 SMART rADcneu6 44 213 IPR020598 GO:0000154|GO:0000179|GO:0008649
Rops1g01594 329 Gene3D - 216 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01594 Rops-Chr1 34123858 34124922 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01594 K14191 - gmx:100790908 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01594 1 34123858 34124922 Rops1g01594 1 34123858 34124922 ECH