Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01591 ATGGCTTCGTCACTGTCCTCCATCTTCAATCAACCTCACACTGTTCAACGCCTTAAGCTTCATCGTCCTTCTTCTGTCACCACACTCAGAATCATCTTCTACCATCATAACCACAAACATAATGCTTCTTTTCCACTCACATGTTACCATCGAACCTCAAGTTCATCGCGACACCCTCTCAATCTCATCACAGGCTCCAGAAGCTTCTCGAATTGTTCCAACAAATTGGAGGGTTCCACACTCCGAAGCTTCATCTCTCAAGCTACACTCACCGCTTCCCAAGCTCAACCTCACCTTGTACCTGATACAGAAGTTCCTTCAACTGGTCGTATATATCATGAGACCTATGGATGTCAAATGAACGTTAATGATATGGAGATTGTTCTGTCTATAATGAAAAATGCTGGCTATAGAGAAATTGTGAGCGTTCCCGAGAGTGCAGAGATAATATTCATCAACACTTGTGCCATTAGAGAAAATGCAGAACAGAAAGTATGGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGCATTGGAAGAACAATGTTGCTACTGGAAGGTCACAATCCCTGCGCCCTCCGAAAGTAGTTGTTTTGGGATGTATGGCTGAGAGGTTAAAGGAAAAGATACTTGATGCAGACAAAATGGTTGATGTGGTTTGCGGCCCTGATGCTTATAGGGATTTGCCGCGATTGCTGGAAGAGGTTGACTATGGACAGAAAGGGATCAACACTCTTCTTTCACTTGAGGAGACTTACGCCGATATTAATCCAGTTCGAATCTCCAAGAACTCAATCAGTGCCTTTGTCTCCATAATGAGGGGTTGCAACAATATGTGCTCATTTTGTATTGTACCTTTCACTAGAGGCAGAGAGCGATCACGTCCTGTGGAATCCATTGTGAGAGAGGTGGCAGAGCTTTGGAAAGAGGGTGTGAAAGAAGTAACGCTTCTTGGCCAGAATGTGAACAGCTACAATGATGCATCTGAGATTGAAAAAGAGGTTGAACAAGGGTCTAATTGGAAACTTAGTGAAGGATTTTCTAGCAAGTGTAAGGTCAAAAATATGGGCTTAAGGTTTGCTGATCTATTGGATCGACTCTCCTCAGAATTTCCTGAGATGCGATTCAGATTCACATCTCCACACCCTAAAGATTTTCCTGATGAATTGCTTTATCTTATGCGAGAAAGACATAATATATGCAAATTGATACATTTACCTGCACAAACAGGAAGTAGCACGGTGCTTGAGAGAATGAGACGAGGATATACTCGAGAGGCTTACTTGGATCTTGTGCAAAAAATTCGAAGTATTATTCCAGATGTGGCCTTAAGCAGTGATTTCATTTGTGGTTTTTGTGGAGAAACAGAAGAGGAACATGCTGACACATTGACTCTCGTAAAAGCTGTTGGTTATGATATGGCATTCATGTTTGCTTACAGCATGAGGGAGAAAACTCATGCCCACAGAAACTATGTTGATGATGTTCCTGAGGAAATAAAGCAGAGGAGGTTAACTGAACTTATTGAGGCTTTCCGTGAGAGCACAGGACAGTGTTATGATTCTCAGATAGGAACTATACAGCTTGTATTAGTTGAAGGACCCAATAGGAGAGCTCCAGATACCGAGCTTATGGGAAAAAGTGACAAAGGCCACCGTGTGTTATTTGTGAATCTTCCAATCGCAGATAGGGAAGATGTTAATACAAAGAGAAATCCTGTGGTTGGTGATTATGTTGAAGTCCGCATAACAAGATCTTCAAGGGCATCACTCTTTGGTGAAGCACTTGCTATAACTAAACTCAGTTCATTTTACAATAATCTAGATAAAGAAGCTGTTGCATGCAGCATGTAA 1854 0.418 MASSLSSIFNQPHTVQRLKLHRPSSVTTLRIIFYHHNHKHNASFPLTCYHRTSSSSRHPLNLITGSRSFSNCSNKLEGSTLRSFISQATLTASQAQPHLVPDTEVPSTGRIYHETYGCQMNVNDMEIVLSIMKNAGYREIVSVPESAEIIFINTCAIRENAEQKVWQRLNYFWFLKRHWKNNVATGRSQSLRPPKVVVLGCMAERLKEKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKNSISAFVSIMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVTLLGQNVNSYNDASEIEKEVEQGSNWKLSEGFSSKCKVKNMGLRFADLLDRLSSEFPEMRFRFTSPHPKDFPDELLYLMRERHNICKLIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRSIIPDVALSSDFICGFCGETEEEHADTLTLVKAVGYDMAFMFAYSMREKTHAHRNYVDDVPEEIKQRRLTELIEAFRESTGQCYDSQIGTIQLVLVEGPNRRAPDTELMGKSDKGHRVLFVNLPIADREDVNTKRNPVVGDYVEVRITRSSRASLFGEALAITKLSSFYNNLDKEAVACSM* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01591 617 ProSiteProfiles TRAM domain profile. 521 597 IPR002792 -
Rops1g01591 617 FunFam CDK5 regulatory subunit-associated protein 1 109 252 - -
Rops1g01591 617 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 110 592 IPR005839 GO:0006400|GO:0016740|GO:0051539
Rops1g01591 617 SFLD methylthiotransferase 108 597 IPR005839 GO:0006400|GO:0016740|GO:0051539
Rops1g01591 617 SFLD methylthiotransferase 109 601 IPR005839 GO:0006400|GO:0016740|GO:0051539
Rops1g01591 617 Gene3D tm_1862 like domain 264 522 IPR023404 -
Rops1g01591 617 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 108 597 IPR006463 GO:0006400|GO:0016740|GO:0051539
Rops1g01591 617 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 51 611 - -
Rops1g01591 617 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 109 238 IPR013848 GO:0035596|GO:0051539
Rops1g01591 617 ProSiteProfiles Radical SAM core domain profile. 262 518 IPR007197 GO:0003824|GO:0051536
Rops1g01591 617 Pfam Uncharacterized protein family UPF0004 110 222 IPR013848 GO:0035596|GO:0051539
Rops1g01591 617 NCBIfam tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 111 594 - -
Rops1g01591 617 SFLD B12-binding domain containing 192 487 - -
Rops1g01591 617 CDD Radical_SAM 270 500 - -
Rops1g01591 617 Pfam Radical SAM superfamily 270 466 IPR007197 GO:0003824|GO:0051536
Rops1g01591 617 Gene3D - 110 252 IPR038135 -
Rops1g01591 617 SMART MiaB 266 507 IPR006638 GO:0003824|GO:0051536
Rops1g01591 617 ProSitePatterns Methylthiotransferase radical SAM domain signature. 270 290 IPR020612 GO:0051539
Rops1g01591 617 Pfam TRAM domain 521 596 IPR002792 -
Rops1g01591 617 FunFam CDK5 regulatory subunit-associated protein 1 264 523 - -
Rops1g01591 617 SFLD CDK5RAP1 109 601 - -
Rops1g01591 617 SUPERFAMILY Radical SAM enzymes 260 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01591 Rops-Chr1 34077447 34080724 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01591 - - gmx:100799544 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01591 1 34077447 34080724 Rops1g01591 1 34077447 34080724 ECH