Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01468 ATGAGAGAAGACCTGGTTCAGTGCTCTACAGACTACGTACCTTTGTCACCGATCAGTTTTCTAGAACGAGCAGCCACTGTCAATGGTGACAAGGTCTCCATCATCTACGATGATCACGTGAAATTTTCTTGGAGAGAAACCCATGAAAGATGCATCAAGCTTGCTTCTGCTTTGGTCCAGTTAGGGATTTCTCAGGGCGATATTGTAGCAGCTTTAGCACCAAATATTCCAGCGCACTACGAGCTTCATTTTGGTGTTCCCATGGCAGGTGCTGTTCTTTCTGCGCTCAACACCAAATTGGATGTCACAACGTTGGCGCTGACATTGGAACAATTAGAGTCTTGCAAAATCATATTTGTGGACCATCAGTTTTTTTATTCTGCCCTCAAAGCATCTGAAATAATCTCCCAAAGAAAATGCAAGCCACCCCTCATTATCCTAATGTCAGATGATGATAAAAAATCATCTTTATTGATCAAGGATATCCCACAAGGTACCTTAAACTACAATGAACTTCTTGCAAAGGGACAACCAGATTTTGAGACTTTACTACCAAGCAATGAATGGAATCCTATATCAGTGAATTTTACATCAGGCTCCACGGGAACTCCTAAAGGAGCTGTTTACAGTCATAGAGGTGCCTATCTTAATTCACTTGCATCAATTGCTCGTTTCAACATGAAACCAATGCCAGTGTTCCTATGGACAGTTGACATGTTTCGTTGCAATGGGTGGTGTTTCACTTGGGCAATGTGTGCTCTTGGTGGCACCAATATTTTCCTTAGAAATGTTTCAGCAAAAGAAATATTTGATGCAATCCACCTTCATAAGGTAACTCATTTTTGTGGTGCACCCTCCCTTTTGGAAATCATTGCAAATGCATCACCAAGTGAGCTGAGGCCTCTACCTCTCAGGGTTAATGTCACAGTTGCAGGTATATTACCACCATTTCAAGTTATCAACAAGGTAGCAGAGCTTGGATTTGATGTGAACATTGGATATGGTATGACAGAGGCTCTGGGTCCTGTCATTCTAAGACAGTGGAACCCCAATTCAGAAGATGAAAATACAAAGCTAAATTATGGTGAAAAAATGATTCCAGACCTTATGATGCAAGGGGTTGATGTGAAAGATCCAAATACTATGAAGAGCACTCCTCATGATGGGAAAACCATAGGTGAAATTATGTTCAAAGGGCATACTCTGATGCTGGGGTACCTTAAGAATTCACAAGTAACTGAAGAAGCTTTTACTGATGGATGGTATAGGACTAGGGACCTTGCTGTTAGGCAACCCAATGGTTCTATAACCTTGAAAGATAGAGCAAAAGATATTATCTATTCGAAGGGAGAGGTTGTGAGCTCACTAGAAGTAGAAGCAGTGTTGTTGAATCATCCAAAGGTTTTGAAAGCAGCTGTTGTGGGGGGATATGATGACTGCTTGGTGGAATCACCATGTGCAATTGTCAAGTTGAAGGATGGATGTAGTGCCACTGTTGAAGATATCATCAAGTTTTGTGAAGATCAGTTGGCTACTCACATGGTTCCTCAGAGTGTGGTCTTTGGTGATTTGCCTGTTAATTCAACTGGGAAGCAAACAAAGGGAGGTAAGGTCTACTGCTGA 1623 0.4165 MREDLVQCSTDYVPLSPISFLERAATVNGDKVSIIYDDHVKFSWRETHERCIKLASALVQLGISQGDIVAALAPNIPAHYELHFGVPMAGAVLSALNTKLDVTTLALTLEQLESCKIIFVDHQFFYSALKASEIISQRKCKPPLIILMSDDDKKSSLLIKDIPQGTLNYNELLAKGQPDFETLLPSNEWNPISVNFTSGSTGTPKGAVYSHRGAYLNSLASIARFNMKPMPVFLWTVDMFRCNGWCFTWAMCALGGTNIFLRNVSAKEIFDAIHLHKVTHFCGAPSLLEIIANASPSELRPLPLRVNVTVAGILPPFQVINKVAELGFDVNIGYGMTEALGPVILRQWNPNSEDENTKLNYGEKMIPDLMMQGVDVKDPNTMKSTPHDGKTIGEIMFKGHTLMLGYLKNSQVTEEAFTDGWYRTRDLAVRQPNGSITLKDRAKDIIYSKGEVVSSLEVEAVLLNHPKVLKAAVVGGYDDCLVESPCAIVKLKDGCSATVEDIIKFCEDQLATHMVPQSVVFGDLPVNSTGKQTKGGKVYC* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01468 540 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Rops1g01468 540 Gene3D - 4 442 IPR042099 -
Rops1g01468 540 PANTHER ACYL-ACTIVATING ENZYME 3 534 - -
Rops1g01468 540 Gene3D - 443 535 IPR045851 -
Rops1g01468 540 Pfam AMP-binding enzyme 21 447 IPR000873 -
Rops1g01468 540 Pfam AMP-binding enzyme C-terminal domain 457 531 IPR025110 -
Rops1g01468 540 SUPERFAMILY Acetyl-CoA synthetase-like 11 533 - -
Rops1g01468 540 CDD ttLC_FACS_AEE21_like 12 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01468 Rops-Chr1 32285237 32305946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01468 3 534 Miscellaneous Gene Families AT3G16910 42.125 1.58e-149 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01468 - - aprc:113870314 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01468 1 32285237 32305946 Rops1g01468 1 32285237 32305946 ECH