Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01465 ATGCTCTCCAAACACTTCCCTCTCTCCTCCACCTTTCGCCTTGAAAAAGTTTTCCCCGTTTACGCCCTGGGCACCCCCGACCCGGATCCAGGACCCGTATTAGACGGGATTTGGGACGCGGTTAGAGAGGAAGCTAAGCTCGAGGCAGAGAAGGAACCAATTTTGAGTAGCTTTTTGTATGCTAGTATTTTATCGCATGATTGTTTGGAGCAAGCACTGGCGTTTGTTGTTGCAAACCGTCTTCAAAACCCTACTCTTTTGGCAACTCAGCTTATTGATATATTTTGCAATGTCATCATGCATGACAAAGCTATCCAACGATCCATTCGCCTTGATATCCAGGCATTTAAAGATCGGGACCCTGCATGTTTGTCATATTGCTCAGCACTTTTGTATATGAAGGGTTACCATTCTTTGCAAGTATATCGAATAGCCCATGCATTGTGGCACCAGGGACGCAAAGTCCTGGCCTTGGCTTTGCAAAGCCGTGTCAGTGAGGTGTTTGGAGTTGACCTTCATCCAGCTGCGAAAATTGGGGAGGGCATTTTATTAGACCATGCGACAGGCGTGGTCATAGGTGAAACTGCTATTATTGGAAACAGAGTTTCATTGATGCAAGGTGTAACATTAGGAGGCACTGGGAAGGAAGTGGGTGATCGCCATCCCAAAGTAGGTGAAGGGGCACTAATTGGAGCTAGTGCAACCATACTTGGGAACATAAGAATTGGTGAAGGTGCAATGATAGCTGCTGGCTCCCTTGTGTTAAAAGAGGTCCCTCCCCACAGCATTGTGGCAGGAATACCAGCAAAAGTTATTGGAGGTCTACAGGAGCATGACCCATCTTTAACCATGAAGCATGATGCTACAAAACAATTTTTCACACATGTTGCTGCTAGCTTTAGAGATGAAAAACCCAGTGGTGCTCAGAATCCAGATAAAAATGAGGTGAACACTTGA 957 0.4598 MLSKHFPLSSTFRLEKVFPVYALGTPDPDPGPVLDGIWDAVREEAKLEAEKEPILSSFLYASILSHDCLEQALAFVVANRLQNPTLLATQLIDIFCNVIMHDKAIQRSIRLDIQAFKDRDPACLSYCSALLYMKGYHSLQVYRIAHALWHQGRKVLALALQSRVSEVFGVDLHPAAKIGEGILLDHATGVVIGETAIIGNRVSLMQGVTLGGTGKEVGDRHPKVGEGALIGASATILGNIRIGEGAMIAAGSLVLKEVPPHSIVAGIPAKVIGGLQEHDPSLTMKHDATKQFFTHVAASFRDEKPSGAQNPDKNEVNT* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01465 318 CDD LbH_SAT 168 268 IPR045304 -
Rops1g01465 318 Gene3D serine acetyltransferase, domain 1 32 170 IPR042122 -
Rops1g01465 318 FunFam Serine acetyltransferase 171 292 - -
Rops1g01465 318 Pfam Bacterial transferase hexapeptide (six repeats) 221 254 IPR001451 -
Rops1g01465 318 NCBIfam serine O-acetyltransferase 109 270 IPR005881 GO:0005737|GO:0006535|GO:0009001
Rops1g01465 318 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 230 258 IPR018357 GO:0016740
Rops1g01465 318 Pfam Serine acetyltransferase, N-terminal 37 140 IPR010493 GO:0005737|GO:0006535|GO:0009001
Rops1g01465 318 PANTHER SERINE ACETYLTRANSFERASE 35 297 - -
Rops1g01465 318 SMART SATase_N_2_a 37 141 IPR010493 GO:0005737|GO:0006535|GO:0009001
Rops1g01465 318 FunFam Serine acetyltransferase 4 30 170 - -
Rops1g01465 318 SUPERFAMILY Trimeric LpxA-like enzymes 37 285 IPR011004 -
Rops1g01465 318 Gene3D Hexapeptide repeat proteins 171 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01465 Rops-Chr1 32251035 32254961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01465 14 318 Miscellaneous Gene Families AT2G17640 69.745 3.52e-151 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01465 K00640 - gmx:100775449 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01465 1 32251035 32254961 Rops1g01465 1 32251035 32254961 ECH