Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01461 ATGGCAGTTCCCCTCAGAATAAACAGCAACAAGCGCGGCGTGCTTGCTCGTTTTAAAACCCTAATCAACTCACAGAGCTTCCACTCCCCTGTTCCCAAAGGACCAATGCGAGATCAACTGTCTCCAGAAACAGACGCTTGCCGAGGTCGCATTGACATTGCAAAATGGAAGACTATGGATGCAAGGAAACTTGGTATAACTAGTTCTATGATTTCACAACCGTCTTGGTATATCCTGAAACTTCTTCGGAACAAAGGATTTAAGTCCTACTTAGTAGGTGGGTGTGTGAGAGATCTACTACTGAATAGAACTCCAAAAGATTTTGATGTGATCACGACAGCAAAGCTTATGGAGGTGAGAAAGCAGTTTCGTCGTGTAGCTCGTGCTGAAGTTGTTGGACGACGTTTTCCAGTATGTCTGGTTCATATAAAAGGTTCAGTAGTAGAGGTGACCAGTTTTGAGACAGTGACACAAACTTCCAAAGGGACAGAACAATTTTTATACTCTCTGTTGCCCAAATGCAGTGATGAAGAAGACCTATTTCGCTGCAAAAACTCCTTGCGCAGGGACTTCACAATTAATAGTTTATTTTATGACCCTTTTGCGAATAAAATTTACGATTATGCCAATGGAATGGCCGACTTGAGGTCCTTAAAGCTAGAAACTGTGCTCCCTGCTCAGCTGTCCTTTAAAGAGGATCCTGGAAGAATTTTGCGCGGCTTCAGAATTGCAGCTCGTCTAGGTTTATCATTATCAAGGGAGACCGAGGCTGCTATCTGGACATATTCTTCACTAGTTAAGAACTTGAACAAGGATAAAATAATGATTGAATTGAACTATATGCTGTCTTATGGAGCTGCCGAACCATCTCTGCGCTTACTCTGGAAATTCAAATTGCTTGAATTTTTACTTCCGGTGCATGCAGCATATCTTGATGAACAGGCGACTAAAGAAGAAGCACAGGCTTCCAATATGTTGATGAAATTATTCTTCCATCTGGATAATTTGGTTGGATGTGCTCGACCTTCTGATTGCACTCTATGGATTGGATTGCTAGCATTTCACCTGGTATTAGTAAATAACCCTCAAGATGCTCTTGTGGTGTGGGCACTTGCTTCTGTTCTCTATCATGGAGAGTGGGAAAAAGGTGTTAAATTTGCTAAAGAACGTGCAAAAAAGTGTGTTAATTTTGCACCTGAAATAAAGAGGTCCACTATGTACAAATCAGATGAAGAAATTGCAAAAGCAGTCTCTAAATTGGCATATTTGGTGATGGACTCCATACCTGCTCTGGTTGAGAATAATAGTCTTCTTCAATCCCTGTCCAGATACCCATCTTTTCCACGCTCTGGCATGGTATTTGTACCAAAGAAAGCTGGAAAAAATGTTTCTGCAATTTTCAAAGTGCTGGTCAATGATATCAAATTTTATAAGAGTGAAAGAAAAAGCTCAAAGATAAATTATGACTTGCTTGGGAGGGGCCACCTCTCAGAGACTGGATTTGTTTTGGGCAAAATTGTTCTTGAAACTATGAGTAGTGGAATTGTCGGGGACGGGGTGGATGTTGAGGCTGAAAACTGTCATCTTAAGACTCAGGTCACCAAGGATATTGGCCAATTGCAACTTTCAGATCTAGTAAACCATCAATTGGTGGCAATGAAAGATAAAAGAGGGGTTTTATCTACACCAAGTCCAGATCATAGGCAAGAAAAAATCAAGAAACGGAAATTGGTTGAGAATGAATGTATTGCAGAAAAACAGAAAATGGGCTCGGAGAACCTTGATTTGTTTGAGAAATTTGAGTACAAGAAAACCAATGAAGAGCACCAGAAGCTAATTAAGTCACGACAGAAGGTTGACCTATCTATGACAGAGGACTCTCTGCCAAAAAGGAAAATTGGCCAATTGCAACTTTCAGATCTAGTAAACCCTCAATTGGCGGCAATGAAAGATAAAAGACGGGTTTTATCTACACCAAGTCCAGATCGTAGGCGAGAAAAAATCAAGAAACGGAAATTGGTTGAGAATGAATGCGTTGCAGAAAAACAGAAAACGGGCTCGGGGAACCTTGAATTGTTTGAGAAATTTGAGTGCAAGAAAACCAATGAAGAGCACCAGAAGCTAGTTAAGTTACGACAGAAGGTTGATCTATCTATGTCAAAGGACTCTCTGCCAAAAAAGAAAATTAGTCACAGAAAACAGCTGATAAATGATGGGAAGAAATCTGCCAGTGCAGGTAAAAGTTCTTTAGACCCAGCCAGGCATTTGAAGATTGATGAGGATGACACATGTACATCATCACAATCTACGGTGTCTAAGAATCATCAGGTGATAGCCAACAACACCAACATAAATGCGGATGTGAAAACAACAAATGATTCAGACTCGAAGAAAAAAATGCATTTATCACGTAGACAGCAATCACATAAAAGGAAGCAAAGTCTGCCTCCACTCTCCAAACTCTTCAAGTAA 2472 0.4053 MAVPLRINSNKRGVLARFKTLINSQSFHSPVPKGPMRDQLSPETDACRGRIDIAKWKTMDARKLGITSSMISQPSWYILKLLRNKGFKSYLVGGCVRDLLLNRTPKDFDVITTAKLMEVRKQFRRVARAEVVGRRFPVCLVHIKGSVVEVTSFETVTQTSKGTEQFLYSLLPKCSDEEDLFRCKNSLRRDFTINSLFYDPFANKIYDYANGMADLRSLKLETVLPAQLSFKEDPGRILRGFRIAARLGLSLSRETEAAIWTYSSLVKNLNKDKIMIELNYMLSYGAAEPSLRLLWKFKLLEFLLPVHAAYLDEQATKEEAQASNMLMKLFFHLDNLVGCARPSDCTLWIGLLAFHLVLVNNPQDALVVWALASVLYHGEWEKGVKFAKERAKKCVNFAPEIKRSTMYKSDEEIAKAVSKLAYLVMDSIPALVENNSLLQSLSRYPSFPRSGMVFVPKKAGKNVSAIFKVLVNDIKFYKSERKSSKINYDLLGRGHLSETGFVLGKIVLETMSSGIVGDGVDVEAENCHLKTQVTKDIGQLQLSDLVNHQLVAMKDKRGVLSTPSPDHRQEKIKKRKLVENECIAEKQKMGSENLDLFEKFEYKKTNEEHQKLIKSRQKVDLSMTEDSLPKRKIGQLQLSDLVNPQLAAMKDKRRVLSTPSPDRRREKIKKRKLVENECVAEKQKTGSGNLELFEKFECKKTNEEHQKLVKLRQKVDLSMSKDSLPKKKISHRKQLINDGKKSASAGKSSLDPARHLKIDEDDTCTSSQSTVSKNHQVIANNTNINADVKTTNDSDSKKKMHLSRRQQSHKRKQSLPPLSKLFK* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01461 823 Pfam Poly A polymerase head domain 90 219 IPR002646 GO:0003723|GO:0006396|GO:0016779
Rops1g01461 823 SUPERFAMILY Nucleotidyltransferase 64 216 IPR043519 -
Rops1g01461 823 Gene3D - 220 454 - -
Rops1g01461 823 Gene3D Beta Polymerase, domain 2 56 217 IPR043519 -
Rops1g01461 823 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 42 530 - -
Rops1g01461 823 CDD NT_ClassII-CCAase 77 216 IPR002646 GO:0003723|GO:0006396|GO:0016779
Rops1g01461 823 SUPERFAMILY Poly A polymerase C-terminal region-like 220 417 - -
Rops1g01461 823 MobiDBLite consensus disorder prediction 763 790 - -
Rops1g01461 823 MobiDBLite consensus disorder prediction 722 823 - -
Rops1g01461 823 MobiDBLite consensus disorder prediction 722 738 - -
Rops1g01461 823 Pfam Probable RNA and SrmB- binding site of polymerase A 248 310 IPR032828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01461 Rops-Chr1 32182473 32200636 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01461 - - gmx:100794882 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01461 1 32182473 32200636 Rops1g01461 1 32182473 32200636 ECH