Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01452 ATGGGCGAACCCGAAGAAGCCTCATCGTATCCTCCGATTGACCCGGTGAACTTCGATCTCATCATCGTCGGCACCGGACTACCGGAATCCATCATCGCCGCCGCCGCATCCGCCGTCGGGAAGACAATCCTCCACCTCGACCCTAACTCCTTCTACGGAAGTCTTTTCGCTTCTCTCTCCCTCGACGAATTCACCTCTTACCTCAATTCACCTCCCAAATCCACCACCTCCGTCGCCTCATCCGGCGATTCCGAATACGTCGTCGTAGACCTCGTCCGGCAACCTCTGTGCTCCGACTCGGAGATCAATTCATTCGCTTCCGGCGACGACGCCGTGCTTCTTCGAGAAAATTCAAGAAAATTCATCCTCGATTTGGGAGGACCTAGGGCATTATTCAGTGCGGAAAAGACGATAGATCTTTTGGTGAAATCAGGTGCTGCACAGTACTTGGAATTCAAGGGAATCGATGAGAGCCTCGTGTACGAATCGAATGGAGGATTGGTGAACGTGCCGGATTCTCGAGGTGCGATTTTCAGAGACAAGAACCTTTCGCTGAAGGAAAAGAACCAATTGATGAGGTTCTTCAAGCTTGTTCAGCAACACTTAGGTGATAATGAGGATGAAAAGATCTTGGAGGAAGATCTGGAGATTCCTTTTGTTAGTTTCCTGGAGAAAATGCGGTTGCCGCCCAAGATAAAATCGATTCTTTTGTATGCTATAGCCATGGTAGATTATGATCAAGACAATAATGAGGTTTGTAAAGATTTACTTAAGACAAAGGATGGAATTGATCGTTTAGCTCAATACAGCTCATCTGTCGGAAGGTTTCCCAATGCACCGGGGGCTTTGCTTTATCCTATTTATGGTGAAGGAGAACTACCACAAGCTTTTTGTCGTCGAGCTGCTGTCAAAGGTTGCATTTATGTTCTCAGAATGCCAGTCACTTCTCTGCTTATGGATAAGGTTACTGGGTCTTATAAAGGTGTTAGATTAGCTTCAGGTCAGGATTTATATAGCCATCAGCTAATCCTGGACCCATCCTTCGAGATTCCATCACCTTTGTCTTTGTCTCTGTCTCCTAGTGATTTTCCCAGTGAAGGGCTCCAAATCTTGAGCCAGAGAGATATTAAAGGAATGGTGGCTAGGGGAATATGCATCACAAGGAGTTCCATAAAGCCAGATGTATCAAATTGCTCTGTGGTGTATCCTCCTAGATCTTTGTATCCTGAACAGGTGACGTCAATCAGAGCTCTTCAGATAGGATCAAATCTCGCTGTTTGCCCTGCGGGCACCTTTGTTTTATACTTTTCCACTTTGTGCAATGATGCGGATGAAGGAAAGAAGTTACTAAAAGCAGCCATGAATGCTCTTCTTACACTGCCTGTATCTGGAAACTCTGAAAGTATTCCCATTGTGCTCTGGAGTGCATTTTATATTCAGAAGTTAACTATGAGTAAATTTGAATCTATCAGTTCTACTCCTACACCGGATGGAAACATAAACTACAATGACCTTTTAGATGCTACTGAGAAGCTATTTGGTCAAATGTACCCCAATGAAGAATTCTTCCCAAAGATAACACCACCTGAAGATGATATGGATGATAATGGGCTAAATCTGGAGAGCTAA 1629 0.4487 MGEPEEASSYPPIDPVNFDLIIVGTGLPESIIAAAASAVGKTILHLDPNSFYGSLFASLSLDEFTSYLNSPPKSTTSVASSGDSEYVVVDLVRQPLCSDSEINSFASGDDAVLLRENSRKFILDLGGPRALFSAEKTIDLLVKSGAAQYLEFKGIDESLVYESNGGLVNVPDSRGAIFRDKNLSLKEKNQLMRFFKLVQQHLGDNEDEKILEEDLEIPFVSFLEKMRLPPKIKSILLYAIAMVDYDQDNNEVCKDLLKTKDGIDRLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCIYVLRMPVTSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFEIPSPLSLSLSPSDFPSEGLQILSQRDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPEQVTSIRALQIGSNLAVCPAGTFVLYFSTLCNDADEGKKLLKAAMNALLTLPVSGNSESIPIVLWSAFYIQKLTMSKFESISSTPTPDGNINYNDLLDATEKLFGQMYPNEEFFPKITPPEDDMDDNGLNLES* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01452 542 SUPERFAMILY FAD-linked reductases, C-terminal domain 377 480 - -
Rops1g01452 542 PIRSF Rab_ger_ger_transf_A_euk 98 539 IPR001738 GO:0005968|GO:0006886|GO:0018344
Rops1g01452 542 PIRSF Rab_ger_ger_transf_A_euk 5 104 IPR001738 GO:0005968|GO:0006886|GO:0018344
Rops1g01452 542 Gene3D - 15 522 IPR036188 -
Rops1g01452 542 Pfam GDP dissociation inhibitor 17 96 IPR018203 GO:0005092|GO:0007264
Rops1g01452 542 Pfam GDP dissociation inhibitor 117 440 IPR018203 GO:0005092|GO:0007264
Rops1g01452 542 FunFam Rab proteins geranylgeranyltransferase component 170 282 - -
Rops1g01452 542 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 95 482 - -
Rops1g01452 542 PRINTS Rab GDI/REP protein family signature 19 37 IPR018203 GO:0005092|GO:0007264
Rops1g01452 542 PRINTS Rab GDI/REP protein family signature 187 202 IPR018203 GO:0005092|GO:0007264
Rops1g01452 542 PRINTS Rab GDI/REP protein family signature 137 153 IPR018203 GO:0005092|GO:0007264
Rops1g01452 542 PRINTS Rab GDI/REP protein family signature 289 310 IPR018203 GO:0005092|GO:0007264
Rops1g01452 542 PRINTS Rab GDI/REP protein family signature 37 54 IPR018203 GO:0005092|GO:0007264
Rops1g01452 542 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 170 282 - -
Rops1g01452 542 PANTHER RAB GDP-DISSOCIATION INHIBITOR 14 525 IPR018203 GO:0005092|GO:0007264
Rops1g01452 542 SUPERFAMILY FAD/NAD(P)-binding domain 16 354 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01452 Rops-Chr1 32018069 32022712 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01452 K23460 - gmx:100795946 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01452 1 32018069 32022712 Rops1g01452 1 32018069 32022712 ECH