Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01446 ATGGCAAGCATAATAAGGCCGTTGCCGGAGGCTGTTCGTAGTTCTGTTCGTTCTGGCATTTTCATCTTCGACTTGACGCGTGTCGTGGAAGAACTCGTTTTCAATAGTCTCGATGCTCGTGCTACAAAGGTATTAGTGTTCGTTGGTATTGGGAGCTGCTATTTAAAAATAGTAGACGACGGAGGTGGAATTACTCGGGATGGACTGGAATTGGTGGGAGAAAGATATGCAACATCAAAATTTCTTAATTTGGCTGACCTGAATGCCACAAGTGGAAACTTTGGTTTTCGTGGGGAAGCTTTAGCTTCCATTTCTGAAGTTTCTTTGTTGGAAATTGTGACAAGAACCTATGGAAGGCCAAATGGATATCGAAAAGTATTGAAGGGGTGCAAGTGTTTATATCTTGGTATTGATGACGACAGAAAGGAAGTGGGCACAACAGTTGTTGTCCGTGAATTATTTTACAACCAACCGGTTCGAAGGAAATACATACAATCCAGCCCCAATAAGGTATTGCAATCAATCAAGAAATGTGTAATGCGGCTTGCGCTTGTTCACCCAAATATTTCCTTCAAAGTTGTTGATATTGAAAGAGAGGATGAGATTTTCTGCACACGTTCTGCTTCTTCTCCACTGTCACTTGTAACCAGTGGCTTTGGGATGGAGGTCACGAGCTCACTTCATGAGTTCGAAGTTGAGAATGATATCGTAAAGCTTTCTGGATACATATCCGGTCCTTTAAATAATTTGAATATAAAGGCCTTACAGTATGTCTATGTTAACTCACAGTTCGTTTGCAAGGGCCCAATTCATAAACTTCTGAGTCAACTGGCTATTAGGTTCGAGCATCTGAACTCATGGAACACTGACAATGAATTCCAAAACAAGAAGAGAAATAGGTCTCAACCATGTCCAGCATATATCTTGAATTTAAGGTGTCCCCGGTCTTTGTATGATTTGACCTTTGAGCCATCAAAAACTTATGTTAAATTCAAGGATTGGGCTCCAATACTTAACTTCATTGAGAAGGCCATCAAACAATTCTGGGAGGAAAGCATAACTTGTGGTGGAGATTCCTCCAATCAAGCCAATTGCATGGTTCAAGAAGATCAAGTGGGGAAAGCAGATGCAGATGTCAAAATCATTTCAGCAGAACCAGATATCTTTGATGCAGATATATCAAAATTTGGAAACCAAAATCATAAGGATTACCTAGACCTCTTCTTTTCCACTTCAGACAAGCTAACTGAAGATGTCTATCATCAAACCAACAGGGAAGATGTTAGAACCTCTCTTGGTTACTTGAATAGAGGGACTGCAATGTTCCAAGAGCAACAAAGTAAGGGAGACTCTCTTTGTCAGACTCGTTATTCTGGCAATTTACTGGATGTTTCAGATGCCAAATGCATGTCCACTGGGATAAGAAAGCATAACAGTTTGTTGATGTATGATAACAATGGTGTATTGCAAGGAGATAACTTTTTGGATGGTAAATTTCCTGCCGCAGAAAGTTCTTATGATAATTTACCTTTTGATGCACCAAGTTCTTCACATGGAAGAAAATTCAATAAAGTAGATGCCAGTATGATCAATGATTCATTCGAAGGTGATTTACTTTATGATTGCCACGGATTCGGTTATGATGTAGAAATTGGTGGGGATTTTCAAAAGCCTTTTCTAAAGAGCTGCTCTACACGAGAGGGATGTATCCTGAATGAGAAGACTTTGCTTGTAAATGGCAAACATGAACTCCAAAGTGATAACTTTTGGAGCAAGCAAAATCTGGGGGAGAATTGTGGCAGTGGTAAGGATTCATGTGACCATCCCTGTCTAATGAAAAAATTGAAGATATCTAAAGATTCTGATTTTCTCATAAGAGCATGGTCTGAAGAAAATTGTCCTCCTCCAGATTCATGCTATTCGGCAACACAAATAGGAAGCTCTGCGTGTGATGATCTGTTATTAAATTCTGAATGGCATCCTGTCTATCAAGAACCCTCGTCTCGAGCCACTGCATTGGGTGTTTATCACACAACTGATATTAATGATCTTGGAGGAGTATCTAGACACTATAAAAGGATCCGTTGTACAAAAATTTTTGATGACGAAGAAAATGAATGCAACTTCAGCTACTATATGTCAAGGAATGCCAACCAACATTGCCGTACCTCAAGTTTTGCCAATAGAGGATTTAATTTTGATGGTGCTATTGATTGTAATGAAACATTTGACAGATTGGTTGACTGGCCAGATTTCAGTGATACATATTTAACAAAAAGGTCAGATATTTTAAATGAGGAGCCAGACTGGCTATTGCCTGAGTCATGTGTTAGAGACTGCAAGAGATCTAACAATAACAAAGGCAAAAGGGATCATTTCAGACATCCAGCTTTGGAGAAGAATCATGAAAGATCTAAAAGAAGCTTTTCTGCTCCTCCATTTCATAGAAGTAAAAGGAGGTTTTCCTCTTTAAATCATCCTCCAGAAATGATACCCAACGGACCTACTGGCCGAGCATCCAACCCTACTTTCAATCATCAAGAAGCGAGTGATTTTAAAAATCCTCAACAATCTCCTGGTTCTCTTTACCCAAGAACTGAAGATCTCCAATTGCAAGAATTCGAAACTAATCTGAAACCAAGTTCAGAGGTTCTGGGAGATACACAGGTTAATGACATTACAGAGATTGATGGGTTTGAAAGTTTCAATATTCAAAACAGCTCTCCATTCAGGGAATTGATCTCTAAGGAAGTGCAAGATCCCATATATTGCGGGACCAAATGGAGGAATGGCTCACCTCAAATTCCAAAGAATGATAAACTGGTTGATATTCAAAGTCAAAATAATATACTCGACATCTCTTCTGGATTCTTGCATCTTGCTGGAGATTCATTGATACCTAAAACTATCAGTAAGAAATGCCTTGAGAATGCTAAAGTTCTCCATCAGGTGGATAAGAAATTCATTCCAATTGTGGCTGGCAGAACCCTTGCTGTTATTGATCAGCATGCTGCTGATGAAAGAGTCAGACTGGAAGAATTGCGGCAAAAGGTATTATCTGGAGAAGCAAAAGCAATAACCTATCTAGATGCTGAACAGGAGCTGGTCCTGCCAGAGATTGGTTATCAACTACTTCATAGTTACCATGAACAAATTAAAGACTGGGGCTGGATTTGCAACATTCATGCTCAAAATTCTGAATCCTTTAGAAGCAATTTGGATATTCTCAACAGACAACAAATGGCCGTCACACTTATTGCGGTACCGTGTATCTTAGGCACCAATTTAAATGATATTGATCTTTTAGAATTTCTTCAGCAGCTTGCTGACACTGATGGATCATCAGCAATGCCACCCTCTGTTATACGAGTCTTAAATTCGAAAGCATGCAGAGGTGCAATCATGTTTGGGGATTCATTGCTACCATCAGAATGTTACCTTCTAGTTGAAGAGCTAAAGCGTACATCACTTTGTTTCCAATGTGCTCATGGGCGACCAACAACTGTTCCTCTAGTCAACTTGGAGGCACTGCATGATCAGATAGCCAAGCTTGGACTGATGAATGAGTGCTCAAGTGACGAGTGGCATGGATTAAAAAGACATAAAGTATGTATAGAACGTGCAGAACAGCGTTTATCTTCTGCTAGAGGAAATTGA 3657 0.3968 MASIIRPLPEAVRSSVRSGIFIFDLTRVVEELVFNSLDARATKVLVFVGIGSCYLKIVDDGGGITRDGLELVGERYATSKFLNLADLNATSGNFGFRGEALASISEVSLLEIVTRTYGRPNGYRKVLKGCKCLYLGIDDDRKEVGTTVVVRELFYNQPVRRKYIQSSPNKVLQSIKKCVMRLALVHPNISFKVVDIEREDEIFCTRSASSPLSLVTSGFGMEVTSSLHEFEVENDIVKLSGYISGPLNNLNIKALQYVYVNSQFVCKGPIHKLLSQLAIRFEHLNSWNTDNEFQNKKRNRSQPCPAYILNLRCPRSLYDLTFEPSKTYVKFKDWAPILNFIEKAIKQFWEESITCGGDSSNQANCMVQEDQVGKADADVKIISAEPDIFDADISKFGNQNHKDYLDLFFSTSDKLTEDVYHQTNREDVRTSLGYLNRGTAMFQEQQSKGDSLCQTRYSGNLLDVSDAKCMSTGIRKHNSLLMYDNNGVLQGDNFLDGKFPAAESSYDNLPFDAPSSSHGRKFNKVDASMINDSFEGDLLYDCHGFGYDVEIGGDFQKPFLKSCSTREGCILNEKTLLVNGKHELQSDNFWSKQNLGENCGSGKDSCDHPCLMKKLKISKDSDFLIRAWSEENCPPPDSCYSATQIGSSACDDLLLNSEWHPVYQEPSSRATALGVYHTTDINDLGGVSRHYKRIRCTKIFDDEENECNFSYYMSRNANQHCRTSSFANRGFNFDGAIDCNETFDRLVDWPDFSDTYLTKRSDILNEEPDWLLPESCVRDCKRSNNNKGKRDHFRHPALEKNHERSKRSFSAPPFHRSKRRFSSLNHPPEMIPNGPTGRASNPTFNHQEASDFKNPQQSPGSLYPRTEDLQLQEFETNLKPSSEVLGDTQVNDITEIDGFESFNIQNSSPFRELISKEVQDPIYCGTKWRNGSPQIPKNDKLVDIQSQNNILDISSGFLHLAGDSLIPKTISKKCLENAKVLHQVDKKFIPIVAGRTLAVIDQHAADERVRLEELRQKVLSGEAKAITYLDAEQELVLPEIGYQLLHSYHEQIKDWGWICNIHAQNSESFRSNLDILNRQQMAVTLIAVPCILGTNLNDIDLLEFLQQLADTDGSSAMPPSVIRVLNSKACRGAIMFGDSLLPSECYLLVEELKRTSLCFQCAHGRPTTVPLVNLEALHDQIAKLGLMNECSSDEWHGLKRHKVCIERAEQRLSSARGN* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01446 1218 Gene3D - 4 209 IPR036890 -
Rops1g01446 1218 SUPERFAMILY DNA mismatch repair protein MutL 979 1171 IPR037198 -
Rops1g01446 1218 Gene3D - 215 354 IPR014721 -
Rops1g01446 1218 Gene3D - 1024 1135 IPR042121 -
Rops1g01446 1218 SMART MutL_C_2 980 1140 IPR014790 GO:0005524|GO:0006298
Rops1g01446 1218 Pfam DNA mismatch repair protein, C-terminal domain 219 348 IPR013507 GO:0005524|GO:0006298|GO:0030983
Rops1g01446 1218 Gene3D - 983 1171 IPR042120 -
Rops1g01446 1218 MobiDBLite consensus disorder prediction 783 810 - -
Rops1g01446 1218 SUPERFAMILY Ribosomal protein S5 domain 2-like 199 350 IPR020568 -
Rops1g01446 1218 CDD HATPase_MutL-MLH-PMS-like 12 199 - -
Rops1g01446 1218 MobiDBLite consensus disorder prediction 783 863 - -
Rops1g01446 1218 FunFam MUTL protein homolog 3 1024 1135 - -
Rops1g01446 1218 NCBIfam DNA mismatch repair endonuclease MutL 5 360 IPR002099 GO:0005524|GO:0006298|GO:0030983
Rops1g01446 1218 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 95 101 IPR014762 -
Rops1g01446 1218 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 119 - -
Rops1g01446 1218 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22 203 IPR036890 -
Rops1g01446 1218 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 4 1176 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Rops1g01446 1218 MobiDBLite consensus disorder prediction 836 863 - -
Rops1g01446 1218 SMART DNA_mis_repair_2 215 350 IPR013507 GO:0005524|GO:0006298|GO:0030983
Rops1g01446 1218 Pfam MutL C terminal dimerisation domain 979 1140 IPR014790 GO:0005524|GO:0006298
Rops1g01446 1218 FunFam DNA mismatch repair endonuclease MutL 2 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01446 Rops-Chr1 31954975 31966417 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01446 K08739 - gmx:100788019 1832.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01446 1 31954975 31966417 Rops1g01446 1 31954975 31966417 ECH