Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01412 ATGGAACTCATCGTTGCTCCGCCGCCAACAGCACCCACCCGCTACATAGACAGCAGCAGCACAACTACTTGTTCTTCTCCCAACCACCACCAACTTGAACTTTCACTACCCCCGCGCCACCCCAAACACAACCTCTCTCTCCTCCACCACTTCCCTTCTCATCACTCTTCTTCACAACCCCTCACTCCTCAAACCACTCCTTGGAGCAACAACAAGAAGAATATCAATGAGAAGAAAAAGAATAAGAGAAAAGGAGCTACAACCTCACACATCTTACACTTGATGGATGCTCTTCCCTTTCCCATACCTATTGACATCTACACCTCTTTGATAAAAGAGTGCACTCTTTCTGGGGACCCTCAAACCGCCACTGAGTTGCATGCCCACATCACCCAGAGTGGCATCAAACCTCCCTTGCCCTTTCTCAATCGGATTCTCATCATGTTTGAATCCTGTGGTATTTTGGAGAATGCACGCCATGTGTTTGATTCAATGCTTGTTAGGGACTTCAACTCTTGGGCCATTTTGTTTGTTGCATACTATGACAATGCTGATTATGAGGAGGCCATCGGTGTTTTTGTCAGCATGATAAGCCAATTGGGTATGATGGAATTTCCTCCATGGATCTGGTCTTGCCTTTTCAAAGCATGTGCTTGCACTGTGAATGTCCCTCTAGGAATACAAGCTCATGGATGGTTATTAAAGTCAGGTACTTGTGACCATGTGCTTGTCAATAGCTCCTTGATAAGCTTTTATGGGAGATTCAAGTGTCTGGAAGATGCAAATGTTGTATTTAATCAAGTGTCACGACATAACACGTTGACTTGGACTGCTAAAATTGTTAGTGGTTGCAGGGAAAGGCATTTCTCCGAGGTTCTTGGTGACTTCAGGGAGATGGGAAGGCAAGGGATAAAGAAAGACAGCTTCACGTTTTCCAGTGTTCTCAAGGCATGTGGGAAGATGCTGGATCATGAACGTTGTGGAGAACAGGTCCATGCTGATGCCATCAAACTTGGGTTGGTCTCGGATAACTATGTGCATTGTAGTTTGATAGCCATGTATGGAAGAAGTGGGTTACTGAGAGATGCAGAACTGGTGTTTGAGATGACCCAAAATGAAAGAAACGTTGATAGTTGGAATGCATCGCTTATGTGTTACATTCAGAATGGTTTGTACATTGAAGCTATTAAGTTTCTGTATCGAATGAAAGCAGCTGGTATGAAGCCCCATGAATCTCTCCTTAATGAAGTGAGAATTGCTTGTGGCAGTATCACCTACTCAAGCATGAATTAG 1293 0.4439 MELIVAPPPTAPTRYIDSSSTTTCSSPNHHQLELSLPPRHPKHNLSLLHHFPSHHSSSQPLTPQTTPWSNNKKNINEKKKNKRKGATTSHILHLMDALPFPIPIDIYTSLIKECTLSGDPQTATELHAHITQSGIKPPLPFLNRILIMFESCGILENARHVFDSMLVRDFNSWAILFVAYYDNADYEEAIGVFVSMISQLGMMEFPPWIWSCLFKACACTVNVPLGIQAHGWLLKSGTCDHVLVNSSLISFYGRFKCLEDANVVFNQVSRHNTLTWTAKIVSGCRERHFSEVLGDFREMGRQGIKKDSFTFSSVLKACGKMLDHERCGEQVHADAIKLGLVSDNYVHCSLIAMYGRSGLLRDAELVFEMTQNERNVDSWNASLMCYIQNGLYIEAIKFLYRMKAAGMKPHESLLNEVRIACGSITYSSMN* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01412 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Rops1g01412 430 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 327 428 - -
Rops1g01412 430 MobiDBLite consensus disorder prediction 1 31 - -
Rops1g01412 430 Pfam PPR repeat 378 406 IPR002885 -
Rops1g01412 430 Pfam PPR repeat 348 369 IPR002885 -
Rops1g01412 430 MobiDBLite consensus disorder prediction 50 72 - -
Rops1g01412 430 MobiDBLite consensus disorder prediction 48 86 - -
Rops1g01412 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Rops1g01412 430 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 424 IPR046960 GO:0003723|GO:0009451
Rops1g01412 430 Gene3D Tetratricopeptide repeat domain 78 220 IPR011990 GO:0005515
Rops1g01412 430 Gene3D Tetratricopeptide repeat domain 277 428 IPR011990 GO:0005515
Rops1g01412 430 MobiDBLite consensus disorder prediction 13 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01412 Rops-Chr1 31300644 31301936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01412 57 425 Glycoside Hydrolase AT3G49170 28.497 9.81e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01412 - - gmx:100778405 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01412 1 31300644 31301936 Rops1g01412 1 31300644 31301936 ECH