Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01400 ATGGCAGAAGCTAGGGTTTTCGGATCATTCGCCGGACGAGCACTCATGGCAGCGGCCAAGGGCACGGCCAAGAAGACCGCTGCTTCCGCCACCGCCACCACCACCACCACCACGACGGCGAAGAAGACTGTCTCCAGAGGGAACACCAACACCGGAATACAGAAGGTGGTTCCGGTCTCTTCCGAGCTCGGAAGGTTCCTCGGCGCGCCTCAAGTTTCAAGAACCGACGCCGTCAAAAGAGTCTGGGAATACATCAAGCTGCAGAATCTTCAGAATCCCACTAATAAGAAGGAGATCTTTTGTGATGAAAAGCTGAAGACCATTTTCGATGGGAAAGATAAAGTAGGGTTCACTGAGATTGCCAGATTGCTGTCTAACCATTTTGTGAAATCAGGCTGA 399 0.5213 MAEARVFGSFAGRALMAAAKGTAKKTAASATATTTTTTTAKKTVSRGNTNTGIQKVVPVSSELGRFLGAPQVSRTDAVKRVWEYIKLQNLQNPTNKKEIFCDEKLKTIFDGKDKVGFTEIARLLSNHFVKSG* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01400 132 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 30 129 - -
Rops1g01400 132 Gene3D SWIB/MDM2 domain 47 132 IPR036885 -
Rops1g01400 132 SMART swib_2 53 132 IPR019835 -
Rops1g01400 132 SUPERFAMILY SWIB/MDM2 domain 48 130 IPR036885 -
Rops1g01400 132 CDD SWIB-MDM2_like 57 128 - -
Rops1g01400 132 MobiDBLite consensus disorder prediction 26 51 - -
Rops1g01400 132 Pfam SWIB/MDM2 domain 57 128 IPR003121 -
Rops1g01400 132 ProSiteProfiles SWIB/MDM2 domain profile. 52 130 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01400 Rops-Chr1 31202458 31203819 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Rops1g01400 SWIB 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01400 - - gmx:100779127 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01400 1 31202458 31203819 Rops1g01400 1 31202458 31203819 ECH