Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01393 ATGGCGAGTGAATCCAGCGCGAAAAGTCCTTCTTCATCTCCGTCGTCAAATTCGGCGGAATCCTTCATTGGTTGCTTCATAAGCTTGATTTCCAAGTGCGATATTCGCTACGAAGGTGTTCTCTATTTCCTTAATATTCAAGATTCCACCATCGGCTTAAACAACGTTAGATCCTATGGAACGGAGGGGAGAAGAAAAGATGGTCCACAAGTTCCTCCAAGTGATAAGGTTTATGAATACATTCTTTTCCGAGGAAATGACATTAAGAATTTGCAGATCAGGCCCCCTTCCACATCTGCCAAAGCAGAAGAGCAGATATTTAGTGATCCGGCTATTATTCAGTCACAATATTTGGGGGTGCCAAATTCTCCGGCGAACTCAGTTGGTGGGAGAAGCTTGACTGAGTCAATTCAGAGGCAAGATAGCCCTGCGATGTCTAGTAAAGCTCATCCTGTTGGGTTGCCTTCTCATCAGTCTGTAACTCAGCTGGGCCCTTCAAATCAATCTGCTGCTACTCAAGTTACCAATCATCCATCTTTTTCTACAGCAATGTATTGGCAAGGACACAGTGGGACATCAAACAATAGCTCTCATTCTCTTCTACAATCTAGTTTTCCTCAACCTCCATCAATGTTATCACCCTTAGCTATGTTGAATCGGATGCAAACTGCAGAAACTCAGGCACCTTCTACAAAAGTGGGATGGACAACTTTATCAGAGTGTGGTCTACCTGTATCTTCTTTGGCTTCTTCTCTTGTAAATCAGACTCGTTCACCTTCTCCAACCTCTTTACAAATTTCTGATTCTCTTGATATTCCATCCCTTTTGCCTACCAAGACATCTATGCCATACTCTGCATCCTTGACTTTTGATGGATCAAACATGCCTTCTTATTCTTCACCACTCCAAGACATAAATTCTATTGAAGGTCAAAGATCCGGACAAATTTGTCCCGACTCAAGGCCAATTCATCCTCGACATTCTGTCCATCATCCCGCTTCTTCATTTGCAGATTATACTTCAGGTCCCTTGCCAACACCTCCATCTTTGTTAACTCCAGATCAATTTGTGCATACTGGAGAACAGTTTTTTTCTATAACACAGAATTTGAACCCTATTCAGAAGGATATGGGTTCTTTGACTCAAACATCCTCTGGATCCCCTGTATTAATGCCTTCTCCAGCATCTCAAGCACCATTACTGCCACTACCGACTTTGGTGCAAAAGTCTCAATACTCAGCTTCACAGTTTGCTGAAGAGTTTGATTTTGAGGCCATGAATGAAAAGTTCAAAAAGGATGAAGTATGGGGTTCTCTAGGAAAGGCAATCTCAAAAGTAGAGGGAGTGGAGCATAATGCTTCTCTCAATTTGGGTGGCAGCGAATTTCAAGGGATGATACCAAACCCCAAGCCCGCCTACAAGAAAGATGACTTTTTTGACACAATTTCTTGTAACTCTGTGACTCGAGGATCAAGGAATGGACAAAATCGTTTATCTGAGAGAATGAAAATGGATACTGAGACCTTTGGCAATTTTCAACAGAGGCCTGGTGCTTATGGCAATTTTCAACAGAAACCTGTTGCTTATGGCAATTTTCAACAGAAGCCTGGTGCTTATGGTGGTGGCTATGGTGCTGGACCGGGTGAGAATTTCAGGAGCTCATATAATTGGGGAAGGGGTTATGGCTATGGTGGGAGAGGGCGAGGCCGAAACTTTCCTTTCTAA 1725 0.4301 MASESSAKSPSSSPSSNSAESFIGCFISLISKCDIRYEGVLYFLNIQDSTIGLNNVRSYGTEGRRKDGPQVPPSDKVYEYILFRGNDIKNLQIRPPSTSAKAEEQIFSDPAIIQSQYLGVPNSPANSVGGRSLTESIQRQDSPAMSSKAHPVGLPSHQSVTQLGPSNQSAATQVTNHPSFSTAMYWQGHSGTSNNSSHSLLQSSFPQPPSMLSPLAMLNRMQTAETQAPSTKVGWTTLSECGLPVSSLASSLVNQTRSPSPTSLQISDSLDIPSLLPTKTSMPYSASLTFDGSNMPSYSSPLQDINSIEGQRSGQICPDSRPIHPRHSVHHPASSFADYTSGPLPTPPSLLTPDQFVHTGEQFFSITQNLNPIQKDMGSLTQTSSGSPVLMPSPASQAPLLPLPTLVQKSQYSASQFAEEFDFEAMNEKFKKDEVWGSLGKAISKVEGVEHNASLNLGGSEFQGMIPNPKPAYKKDDFFDTISCNSVTRGSRNGQNRLSERMKMDTETFGNFQQRPGAYGNFQQKPVAYGNFQQKPGAYGGGYGAGPGENFRSSYNWGRGYGYGGRGRGRNFPF* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01393 574 PANTHER SCD6 PROTEIN-RELATED 17 571 - -
Rops1g01393 574 MobiDBLite consensus disorder prediction 126 145 - -
Rops1g01393 574 ProSiteProfiles Sm domain profile. 14 97 IPR047575 GO:0003723
Rops1g01393 574 ProSiteProfiles DFDF domain profile. 409 445 IPR025762 -
Rops1g01393 574 MobiDBLite consensus disorder prediction 126 152 - -
Rops1g01393 574 SUPERFAMILY Sm-like ribonucleoproteins 21 96 IPR010920 -
Rops1g01393 574 Pfam Scd6-like Sm domain 22 93 IPR025609 -
Rops1g01393 574 ProSiteProfiles FFD box profile. 471 486 IPR025761 -
Rops1g01393 574 Gene3D - 13 96 - -
Rops1g01393 574 ProSiteProfiles TFG box profile. 493 513 IPR025768 -
Rops1g01393 574 CDD LSm14_N 22 93 IPR025609 -
Rops1g01393 574 SMART FDF_2 415 513 IPR019050 -
Rops1g01393 574 Pfam FDF domain 416 511 IPR019050 -
Rops1g01393 574 SMART LSM14_2 16 117 IPR025609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01393 Rops-Chr1 31052047 31058068 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01393 K18749 - gmx:102669894 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01393 1 31052047 31058068 Rops1g01393 1 31052047 31058068 ECH