Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01375 ATGGGTTTGCCAAGGTTTGGGCGTCCTAAGAATGATGGTGAATTGAGTTCAAACCTTTATGTGGCTAATTGTGGGCCAGCAGTGGGGCTTTCTAATGATGATATTGCATCCTTGTTCTCCAAATTTGGGGAGCTAAAGGGAGTTTATGCAGCAGATGAAAGTGGCACACGTGTCATTGTATCTTATTCTGAAGAGGGTTCTGCTCAATCTGCATTAGAGGCTCTACATGGACGCCCATGTCCTGAACTTAATGGTAGATCCTTGCATATCCGTTATTCAGTTCTTCAGCCAACTCCACAGAATCAAGTGAGGGACTTGGTTGTTCCTGTATCTATCACAGCTTCAGAGCTGAGCATTCCAGGCATTTACCTTGTGCATGACTTCATTAGTGCTAAAGAAGAAGAGGAATTGCTCCAAGCTGTTGACTGTGGGCATTGGAATAATCTTTCAAAAAGAAGGGTTCAACACTATGGTTATGAGTTTTGTTATGACACTAGGAATGTTAATACGAGGCATTGCTTAGGTGAACTTCCATCATTTGTTTCTCCAATACTTGAAAGAATCTCATCTTGTCCAACTTTCAAGAATACTGGTAGTATAGTTTTGGATCAACTTACGGTGAATGAGTACCCACCTGGAGTGGGCTTGTCTCCTCATATAGACACACACTCTGCATTTGAAGATTTAATTTTCAGTCTTTCATTATCAGGGCCTTGTATAATGGAGTTCAGACGATATGGAAATGGCGATTGGCTTCCTAGAATTGCCTCAAGTGCTATTACAAAAGTAGAAAATCCAGAAGATGATTCAAATTTTATAAAAAGGGCTATCTATCTTCCCCCTCGATCTTTGCTACTTATGTCTGGAGAAGCACGTTATGCATGGCATCATTACATTCCACACCACAAGATAGATGAAGTGAATGGAAGAGCCATCAGAAGGGCTTCAAGAAGGGTCTCTTTTACATTCCGTTACAACAGGTTTGTGCAAATGCGAATTCCCTCAGTATTGCGACTCTCAAAGATAAGGTTTCACCGAAGTGGCAAGGAGAAGGTTTATGTCATTGAGAGTTACAATGAGTATAACCTGAGGTGA 1095 0.4128 MGLPRFGRPKNDGELSSNLYVANCGPAVGLSNDDIASLFSKFGELKGVYAADESGTRVIVSYSEEGSAQSALEALHGRPCPELNGRSLHIRYSVLQPTPQNQVRDLVVPVSITASELSIPGIYLVHDFISAKEEEELLQAVDCGHWNNLSKRRVQHYGYEFCYDTRNVNTRHCLGELPSFVSPILERISSCPTFKNTGSIVLDQLTVNEYPPGVGLSPHIDTHSAFEDLIFSLSLSGPCIMEFRRYGNGDWLPRIASSAITKVENPEDDSNFIKRAIYLPPRSLLLMSGEARYAWHHYIPHHKIDEVNGRAIRRASRRVSFTFRYNRFVQMRIPSVLRLSKIRFHRSGKEKVYVIESYNEYNLR* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01375 364 Gene3D - 112 330 IPR037151 -
Rops1g01375 364 Pfam 2OG-Fe(II) oxygenase superfamily 158 324 IPR027450 -
Rops1g01375 364 Gene3D - 7 106 IPR012677 -
Rops1g01375 364 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 201 327 IPR005123 -
Rops1g01375 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Rops1g01375 364 SMART rrm1_1 18 91 IPR000504 GO:0003723
Rops1g01375 364 SUPERFAMILY Clavaminate synthase-like 119 325 - -
Rops1g01375 364 PANTHER OXYGENASE-RELATED 87 325 IPR032857 GO:0070988
Rops1g01375 364 FunFam ALKylated DNA repair protein AlkB homolog 115 330 - -
Rops1g01375 364 SUPERFAMILY RNA-binding domain, RBD 10 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01375 Rops-Chr1 30503940 30508622 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01375 K10770 - gmx:100777529 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01375 1 30503940 30508622 Rops1g01375 1 30503940 30508622 ECH