Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01358 ATGGAAGCAGCACTACTAGCGTTGAATTGCAGTGGCAGTTACAGCATCGCAAAAGCGAGTGCGATTCCGTTTCCATCGCTGTTAGTATCTCCGCTTCACCATCATCATCGTCATCGTCTTCTTCGGAACAAGCCATTTTCATCTGCGATATTCACTCTCAGAAAAAGAGGGTTTAGTGAGAAGGTTATGTCCAAAATGGCAAATTATGAAGGACAGAAGGTTACTAGTGGTAACGATGTGAGATCAGGGAATATGATTTTTGTGCCTATTTTGGATGATGGAGTGTTCCGATTTGATTGTTTTGAAAATGATAGAGATGCTGCATATCCCAGTATTTCTTTTGTGAATAGCAGGGATAGAGAAACTCCCATCACTACTGACAAAGTTCCTTCATATACTCCTACTTTTGAGTACCTTCTAGAGCAGCAGGTTGTCACACTTGAGCTGCCTATTGATTCCTCTCTCTATGGAACTGGAGAAGTTAGTGGACAGCTCGAGAGGACAGGCAAAAGAGTTTTCACATGGAACACTGATGCATGGGGTTATGGTCCTGGAACTACATCCTTATACCAATCACATCCATGGGTGTTAGCTGTTCTTCCAAATGGCGAGGCACTAGGAATTCTTGCTGACACTACGAAGCGCTGTGAGATTGATCTGAGGAAGGAATCAACAATACGTTTCGTTGCTCCATCCTCATATCCTGTTATTACATTTGGTCCTTTTGCTTCACCCACGGAAGTTTTGATATCTCTATCAAAAGCAATTGGAACTGTGTATATGCCCCCCAAATGGTCATTAGGCTATCAACAATGCCGTTGGAGCTATTTATCTGATCAGAGAGTTCTGGAGGTTGCAAAAACATTCCGAGAAAAGCGCATACCTTGTGATGTGATATGGATGGATATCGATTACATGGACGGTTTTCGTTGCTTTACCTTTGACAAGGAGCGTTTTGGAGATCCTAAGTCTTTAGCCAAAGACCTCCATTACAGTGGTTTTAAAGCTATTTGGATGCTCGATCCTGGGATAAAGCAGGAAGAAGGTTATTTTGTATATGATAGTGGTTCTAAAAATGATGTTTGGGTCCAAAAGGCAGATGGAACACCTTTTGTTGGGGATGTGTGGCCTGGGCCTTGTGTCTTCCCTGACTATACACAGTCAAAAGTTCGTGCATGGTGGGCAAATTTAGTTAAAGACTTCATTTCTAATGGTGTTGATGGTATATGGAATGATATGAATGAACCAGCTATCTTTAAGGCTGTAACAAAAACAATGCCTGAGAGCAATGTCCATAGAGGAGATGGTGAGCTTGGAGGTTGTCAGAATCATTCTTTCTATCATAATGTGTATGGTCTGCTGATGGCAAGATCAACCTTTGAAGGCATGAAACTAGCTAATGAAAATAGGCGTCCTTTTGTTCTCACCAGAGCTGGATTTATTGGCAGCCAAAGGTATGCTGCAACATGGACAGGAGATAATCTTTCAACCTGGGAGCATCTTCATATGAGTATCTCCATGGTACTTCAGCTGGGACTCAGTGGTCAGCCATTTTCAGGACCTGATATTGGTGGATTTGCTGGAAATGCAACACCAAGGCTTTTTGGAAGGTGGATGGGTGTAGGTTCCCTGTTTCCCTTTTGTCGAGGGCATTCTGAAGCTGGCACTGTTGACCATGAACCGTGGTCTTTTGGGGAAGAGTGTGAAGATGTTTGCCGATTGGCATTGAGGAGGCGATACCGTCTTATCCCACTTATCTACACACTTTTTTATTTTGCACATACAAGGGGCATTCCAGTGGCAACCCCTACCTTCTTTGCTGATCCAAAAGATCCAAGACTGAGGAAACTTGAAAATTCGTTTTTGCTTGGTCCAGTTTTAGTGTATGCAAGCACCTTACGCAGTCAGGGGTTGGATAAGTTGGAGTTTACTTTGCCTAAGGGGATATGGTTGACTTTCGATTTCGCTGATACACATCCGGATTTGCCAGCTTTATACTTGAAAGGTGGCTCAATTATTCCCGTCGGCCTCCCTCTTCAGCATGTTGGAGAAGCTAATCCATCACATGAGTTGACACTTCTTGTGGCTTTAGACGAATACGGGAAAGCTGAAGGTTTTCTATTTGAGGATGATGGTGATGGATATGAATTCACTAAAGGCAATTATTTGTTAACCCATTATGTGGCCGAACGTCAATCATCAGTTGTTACAGTGAGTGTGCACAGAACTGAAGGATCATGGAGAAGACCTAAACGCCAACTTCATATTCAATTATTGCTAGGTGGGGGTGCAACGACTGATACATGGGGAATGGATGGGGAAGTTCTGCGAGTAATTTTGCCTTCGGAAGAGGTGGTGTCAAAGCTGGTATCTTCCTGTGAGAAGCATTACAAGGAACAGTTGGAAAAAGCAATTCAAATTCCTGATGTAGAAGAAGTTTCTGGACCCAAGGGAATAGAGCTTTCAAGAACCCCCATTGAACTGAAAAATGGTGAGTGGGTTCTTAAAGTTGTTCCCTGGATCGGGGGTAGAATCATCTCCATGATGCACATTCCTTCAGGAATACAATGGCTCCATAGCAGGATTGAGATCAATGGGTATGAGGAGTATAGTGGTATGGAGTATCGTTCTGCTGGGTGTTCTGAGGAATATACTGTCATTGATCGAGAACTTGAGCATGCAGGAGAGGAGGAATCCGTGGTATTAGAGGGTGACATCGGTGGAGGATTGGTTCTTCAACGGCAGATCTATTTTCCAAAGAATGCCGCCAATGTTGTCCAGATAGACTCTAGCATAATAGCCCACAGCGTCGGAGCTGGTTCTGGAGGGTTCTCAAGGTTGGTCTGCTTAAGAATTCACCCAACATTCATGCTTTTGCACCCCACAGAATCTTTTGTCTCATTTACCTCAATTGATGGATCGATGCATGAAGTCTTTCCTGATGGTGGGGAGCAAATCTTCGAAGGAAACCTTATTCCTAATGGTGAGTGGAGGCTCGTTGATAAATGTCTTGGCTTGGCCCTGGTGAATCGGTTTAATGTTAGTGAGGTATTCAAGTGTCTTGTTCACTGGGACTGTGGCGTTGTCAACCTGGAGCTTTGGTCCGAGAGCAGACCTGTCTCAAAGCAATCCCCTCTCCGAATTTCCCATCAGTACGAGGTTGTGAGACTTCCTTAA 3177 0.4381 MEAALLALNCSGSYSIAKASAIPFPSLLVSPLHHHHRHRLLRNKPFSSAIFTLRKRGFSEKVMSKMANYEGQKVTSGNDVRSGNMIFVPILDDGVFRFDCFENDRDAAYPSISFVNSRDRETPITTDKVPSYTPTFEYLLEQQVVTLELPIDSSLYGTGEVSGQLERTGKRVFTWNTDAWGYGPGTTSLYQSHPWVLAVLPNGEALGILADTTKRCEIDLRKESTIRFVAPSSYPVITFGPFASPTEVLISLSKAIGTVYMPPKWSLGYQQCRWSYLSDQRVLEVAKTFREKRIPCDVIWMDIDYMDGFRCFTFDKERFGDPKSLAKDLHYSGFKAIWMLDPGIKQEEGYFVYDSGSKNDVWVQKADGTPFVGDVWPGPCVFPDYTQSKVRAWWANLVKDFISNGVDGIWNDMNEPAIFKAVTKTMPESNVHRGDGELGGCQNHSFYHNVYGLLMARSTFEGMKLANENRRPFVLTRAGFIGSQRYAATWTGDNLSTWEHLHMSISMVLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGVGSLFPFCRGHSEAGTVDHEPWSFGEECEDVCRLALRRRYRLIPLIYTLFYFAHTRGIPVATPTFFADPKDPRLRKLENSFLLGPVLVYASTLRSQGLDKLEFTLPKGIWLTFDFADTHPDLPALYLKGGSIIPVGLPLQHVGEANPSHELTLLVALDEYGKAEGFLFEDDGDGYEFTKGNYLLTHYVAERQSSVVTVSVHRTEGSWRRPKRQLHIQLLLGGGATTDTWGMDGEVLRVILPSEEVVSKLVSSCEKHYKEQLEKAIQIPDVEEVSGPKGIELSRTPIELKNGEWVLKVVPWIGGRIISMMHIPSGIQWLHSRIEINGYEEYSGMEYRSAGCSEEYTVIDRELEHAGEEESVVLEGDIGGGLVLQRQIYFPKNAANVVQIDSSIIAHSVGAGSGGFSRLVCLRIHPTFMLLHPTESFVSFTSIDGSMHEVFPDGGEQIFEGNLIPNGEWRLVDKCLGLALVNRFNVSEVFKCLVHWDCGVVNLELWSESRPVSKQSPLRISHQYEVVRLP* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01358 1058 Gene3D - 670 795 IPR013780 -
Rops1g01358 1058 CDD GH31_N 145 257 - -
Rops1g01358 1058 Gene3D glycosyl hydrolase (family 31) 105 240 - -
Rops1g01358 1058 PANTHER ALPHA-GLUCOSIDASE 148 745 - -
Rops1g01358 1058 SUPERFAMILY (Trans)glycosidases 254 597 IPR017853 -
Rops1g01358 1058 ProSitePatterns Glycosyl hydrolases family 31 active site. 408 415 IPR030458 -
Rops1g01358 1058 Gene3D Glycosidases 260 581 - -
Rops1g01358 1058 SUPERFAMILY Galactose mutarotase-like 86 225 IPR011013 GO:0003824|GO:0005975|GO:0030246
Rops1g01358 1058 CDD GH31_glucosidase_II_MalA 257 597 - -
Rops1g01358 1058 Gene3D - 582 666 IPR013780 -
Rops1g01358 1058 Pfam Galactose mutarotase-like 153 219 IPR025887 -
Rops1g01358 1058 Pfam Glycosyl hydrolases family 31 244 673 IPR000322 GO:0004553|GO:0005975
Rops1g01358 1058 Pfam Domain of unknown function (DUF5110) 690 759 IPR033403 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01358 44 1058 Glycoside Hydrolase AT3G23640 70.927 0.0 1556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01358 - - gmx:100809690 1835.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01358 1 30271284 30289223 Rops1g01358 1 30271284 30289223 ECH