Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01349 ATGAAATTAAGGACTAAAGCTAATAATAAACAGGCTTGTATTGCCATGGGGGAGGTCACTGGGAATGATGATTATGTGACTGTTGGTGAATTACCTTCCCCCAGGGCAAATCACATGAAGAAAGTTTCAGTTCTTCCTCTTGTGTTTCTCATCTTCTATGAGGTTTCCGGGGGGCCTTTTGGTGTTGAGGATACCGTGCAGGCAGCTGGTCCTCTATTAGCCCTTCTTGGCTTCTTGATTTTCCCAATCATATGGAGTGTTCCCGAAGCTCTGATTACTGCTGAGATGGGTACCATGTTCCCTGAAAATAGTGGTTATGTGGTTTGGGTTTCAGCTGCTTTGGGTCCTTATTGGGGGTTTCAGCAAGGTTGGATGAAATGGCTGAGTGGGGTGATAGACAATGCTTTATACCCAGTTCTATTTCTTGATTATCTGAAGTCAGCAATCCCTGCTTTTGGTGGTGGCATACCTAGAGTTGTTGCAACCTGGGGTCTGACAATAGCTCTCACTTACTTGAACTACAGGGGTTTGACCATCGTGGGATGTGTTGCTGTCTGTTTAGGGGTTTTCTCACTCCTTCCATTTGTGGTTATGGGGTTGTTGTCAATTCCAGAATTGAAACCTTCAAGATGGTTTGTGACAGATCTGAAGGATGTTGACTGGAATTTGTATCTGAATACTCTATTTTGGAATCTTAATTATTGGGACTCAATAAGTACTCTTGCTGGAGAAGTTGAAAATCCAAAGAAAACTCTTCCAAAAGCCTTGTTTTATGCTGTGATCCTAGTTGTTTTGGGATACTTCTTTCCTCTTCTAGTTGGTATTGGTGCTGTTCCCGTCAACCGTGAGTTGTGGACTGATGGTTACTTCTCTGATATTGCTATGGTCATTGGAGGAGTGTGGTTGAGATGGTGGCTCCAGGCTGCTGCTGCAATGTCAAATATGGGAATGTTTGTTGCTGAAATGAGCAGTGATTCTTACCAGCTTCTAGGGATGGCTGAGAGAGGAATGTTACCTGATTTCTTTACCAAGAGATCTCGCCATGGAACCCCTCTTATTGGAATACTCTTTTCAGCCTCTGGTGTAATTTTACTATCATGGTTGAGTTTTCAAGAAATTGTAGCTGCAGAAAATTTCTTGTACTGTCTTGGAATGATTTTGGAGTTCATTGCATTCATATTGTTGAGGATCAAACACCCAAATGCATCTAGGCCTTACAAGATACCAGGGGGAACAGTTGGAGCAATTCTTATGTGTATCCCTCCCACAATATTGATTTGTGTTGTGATGTTTCTCTCTTCCCTCAAAGTACTGATTATAAGCCTCATTGCTGTGGCAATTGGCCTTGTGATGCAGCCTGGTCTCAAATTTGTGGAGAAAAAGAGATGGATGAAGTTCTCCCATAGCTCTGACCTCCGTGATTTAAATGATGAGGATGGTACTCACAATTTGGTGTATTAG 1461 0.4251 MKLRTKANNKQACIAMGEVTGNDDYVTVGELPSPRANHMKKVSVLPLVFLIFYEVSGGPFGVEDTVQAAGPLLALLGFLIFPIIWSVPEALITAEMGTMFPENSGYVVWVSAALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPAFGGGIPRVVATWGLTIALTYLNYRGLTIVGCVAVCLGVFSLLPFVVMGLLSIPELKPSRWFVTDLKDVDWNLYLNTLFWNLNYWDSISTLAGEVENPKKTLPKALFYAVILVVLGYFFPLLVGIGAVPVNRELWTDGYFSDIAMVIGGVWLRWWLQAAAAMSNMGMFVAEMSSDSYQLLGMAERGMLPDFFTKRSRHGTPLIGILFSASGVILLSWLSFQEIVAAENFLYCLGMILEFIAFILLRIKHPNASRPYKIPGGTVGAILMCIPPTILICVVMFLSSLKVLIISLIAVAIGLVMQPGLKFVEKKRWMKFSHSSDLRDLNDEDGTHNLVY* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01349 486 Gene3D Amino acid/polyamine transporter I 38 468 - -
Rops1g01349 486 Pfam Amino acid permease 49 443 IPR002293 GO:0016020|GO:0022857|GO:0055085
Rops1g01349 486 FunFam Amino acid permease, putative 38 467 - -
Rops1g01349 486 PIRSF AA_transporter 20 482 - -
Rops1g01349 486 PANTHER POLYAMINE TRANSPORTER PUT1 35 477 IPR044566 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01349 Rops-Chr1 30150645 30152992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01349 16 483 Organic Solute Cotransporters AT1G31830 74.051 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01349 - - gmx:100813355 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01349 1 30150645 30152992 Rops1g01349 1 30150645 30152992 ECH