Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01276 ATGGCTTCTAAATCGCATTTCAAACATAGTTCATCCATGGTTCGGAAGATCACCCAGCTGAGCAATGATTTGGATCAGGAAAGTGAGAGTGGGAGTGTTGGTCTTGCTACCTACACAGTGCACATTCCTCCAACACCCGACAATCAACCAATGGATATTTCTCTGGAGAGGTCCACTTCTCGGAGAGTGGAGGATCATTATGCATCTAGTTCTATGTTTACTGGTGGTTTTAATCAGGTTACACGAGCCCATTTGAAGGATAAGGTGATTGAATCTGAATCCATCCATCCCCAAATGGCTGGTGCAAATGGGTCATCTTGTGCTGTGCCTGGTTGTGATGGTAAAGTCATGACTGATGAGAGAGGATTGGATATTCTCCCTTGTGAGTGTGATTACAAGATTTGTGGGGATTGTTATAGGGATGTTTTGAGGGTTGGTGAAGGGATTTGCCCAGGATGCAAAGAGCCTTACAAGGAGCCTGAGATGCAAGAGACTTCTGGGGTCAGTCAACAAGCACTACCCTTGCCACCTGGTGCTGGGGTGTCTAAGATGGAGAGGAGGTTGTCATTGATGAAATCAGGGACTTTGACGAGGAGCCAAACTAATGAATTTGATCATGCTCAATGGTTGTTTGAAACAAAGGGGAGCTATGGATATGGGAATGCTATGTGGCCTAAAGATTCTGAAAATGATGCTAGTTCTGGTTCTGATTGGATGGGTGGTGACCCTAATGTATTCACTGAAAAGCAGTGGAGGCCTTTGACCCGGAAATTAACTATTTCTGCTGCAGTTCTGAGTCCATATCGGCTCATAATATTAGTTCGGCTGGTGGTTCTTGCTTTCTTCCTACAATGGAGGATCCAAAACCCCAATGAGGATGCACTCTGGCTGTGGGGCATGTCTGTTGTTTGTGAAATCTGGTTTGCCTTCTCCTGGCTGCTTGATCAGCTTCCTAAGCTCTTTCCCATAAATCGTGTCGCTGACCTTGATGTTCTAAAAGAGAAATTTGAAACTCCTAGTCCCACCAATCCTTCTGGCAAGTCTGATCTTCCAGGAATAGATATGTTTGTGTCAACTGCAGATCCAGAAAAAGAACCACCACTTGTAACTGCAAATACTATTCTTTCTATTCTAGCTGCTGATTATCCTGTTGAGAAACTCTCATGTTATGTCTCTGATGATGGAGGTGCACTTTTAACTTTTGAGGCCATGGCAGAGGCAGCAAGTTTTGCCAATTTGTGGGTTCCTTTTTGTAGGAAGCATGACATTGAACCCAGGAACCCAGACTCTTATTTTAGTCTGAAGAGAGATCCCTACAAGAACAAAGTACGTTCTGACTTTGTCAGGGACCGCAGGCAGGTAAAGAGGGAGTATGATGAGTTCAAGGTTCGGATTAATGGCCTTCCTGATTCAATCCGGCGCCGTTCTGATGCTTATAATGCTAGAGAGGAGATCAAAGCTATGAAGCTGCGGAGAGAGAATGGAAATGATGAACCAGTGGAGAATTTAAAAATTCCTAAAGCTACTTGGATGGCTGATGGTACTCACTGGCCTGGCACTTGGACATCTCCTGCACCAGAACATTCCAGGGGTGATCATGCTAGTATCATACAGGTAATGTTAAAACCTCCAAGTGATGAACCACTTACTGGCACAGAATCAGATTCAAATGCCTTGGATTTCACTGAAGTTGATATTCGTCTTCCTATGCTTGTCTATGTTTCTCGTGAAAAACGACCTGGCTATGATCACAACAAGAAGGCCGGGGCCATGAATGCTTTGGTTCGAGCCTCAGCCATTATGTCCAATGGCCCTTTCATACTTAATCTTGACTGTGACCATTACATATATAACTCACAGGCACTGAGAGAAGGTATGTGCTTCATGATGGATGGCGGTGGAGACAGGATCTGCTATGTTCAATTTCCTCAAAGGTTTGAAGGAATTGATCCTTCTGATCGCTATGCCAATCATAACACTGTCTTCTTTGATGTCAATATGCGTGCTCTCGATGGGATTCAAGGTCCTGTATATGTTGGCACAGGATGCCTATTTCGAAGAACTGCATTGTATGGCTTTGATCCACCAAGGGTGAAAGAAGAGGCTGGTTGGTTTGGTAACAAGAATAAGAAATCCTCAACAGTTGCCTCAGTCCCTGAAGTTGGTTCTGTTGAGAACCAGTCATTGAGGAATGGTAGCATTGGTGATGAAGAAATGAGCATTGCTCTTATTCCAAAGACATTTGGCAACTCAAGTCTTCTTGTAGATTCAATCAGGGTGGCTGAATTCCAAGGGAGGCCTCTTGCTGATCATCAATCCATTAAAAATGGACGTCCACCGGGTGCTCTAACTCTTCCTCGGGATCCTCTTGATGCTGCCACTGTTGCTGAGGCCATCAATGTGATCTCATGTTGGTATGAAGATAAGACTGAATGGGGCCTTAGAGTTGGGTGGATTTATGGTTCTGTAACTGAAGATGTTGTGACAGGTTATAGAATGCACAATAGGGGATGGAGATCTGTGTATTGTGTGACCAAGAGAGATGCTTTCCGTGGAACTGCTCCAATCAATCTTACTGACAGGCTGCATCAAGTTCTTCGATGGGCAACCGGCTCGGTTGAGATATTCTTTTCGCGTAACAATGCTCTTTTAGCTAGCTCTAGATTGAAATTCCTGCAGAGGATTGCTTACCTTAATGTTGGGATTTATCCATTCACTTCAATCTTCCTTATTGTTTATTGCTTCCTTCCTGCCCTTTCACTTTTCACTGGTCAATTCATTGTTCAGTCACTTCAAGTCACCTTCCTAGTTTACCTCTTGGGAATCACCTTGACCCTTGTTCTTCTTGCTGCTCTTGAGATCAAGTGGTCTGGTATTGAACTAGAAGAATGGTGGAGGAATGAGCAATTCTGGTTGATTGGTGGCACAAGTGCACATCTTGCTGCTGTGCTTCAAGGTCTACTAAAGGTGATAGCTGGCATTGAGATTTCATTCACTTTGACATCAAAGTCTTCTGGTGATGATGAAAATGATGAATATGCTGATCTTTATGTCATTAAGTGGACCTCCCTTATGATACCACCGATCACAATCATGATGGTCAATTTGATAGCAATTGCAGTTGCAGTTAGCAGAACTATATATAGTGATGATCGTCAATGGAGTAGTTTGCTTGGAGGTGTGTTCTTCAGTTTTTGGGTCTTGGCTCATCTATATCCCTTTGCTAAAGGGCTTATGGGTAGAAGGGGTAAGACACCTACTATTGTGTTTGTGTGGTCAGGTCTTATATCAATTACTATCTCACTACTTTGGGTTGCTATTGACCCTCCTTCTGGCAGCACTCAAATTGGAGGATCTTTCCAATTCCCTTGA 3372 0.4371 MASKSHFKHSSSMVRKITQLSNDLDQESESGSVGLATYTVHIPPTPDNQPMDISLERSTSRRVEDHYASSSMFTGGFNQVTRAHLKDKVIESESIHPQMAGANGSSCAVPGCDGKVMTDERGLDILPCECDYKICGDCYRDVLRVGEGICPGCKEPYKEPEMQETSGVSQQALPLPPGAGVSKMERRLSLMKSGTLTRSQTNEFDHAQWLFETKGSYGYGNAMWPKDSENDASSGSDWMGGDPNVFTEKQWRPLTRKLTISAAVLSPYRLIILVRLVVLAFFLQWRIQNPNEDALWLWGMSVVCEIWFAFSWLLDQLPKLFPINRVADLDVLKEKFETPSPTNPSGKSDLPGIDMFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANLWVPFCRKHDIEPRNPDSYFSLKRDPYKNKVRSDFVRDRRQVKREYDEFKVRINGLPDSIRRRSDAYNAREEIKAMKLRRENGNDEPVENLKIPKATWMADGTHWPGTWTSPAPEHSRGDHASIIQVMLKPPSDEPLTGTESDSNALDFTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQALREGMCFMMDGGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGIQGPVYVGTGCLFRRTALYGFDPPRVKEEAGWFGNKNKKSSTVASVPEVGSVENQSLRNGSIGDEEMSIALIPKTFGNSSLLVDSIRVAEFQGRPLADHQSIKNGRPPGALTLPRDPLDAATVAEAINVISCWYEDKTEWGLRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASSRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFTGQFIVQSLQVTFLVYLLGITLTLVLLAALEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSSGDDENDEYADLYVIKWTSLMIPPITIMMVNLIAIAVAVSRTIYSDDRQWSSLLGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLISITISLLWVAIDPPSGSTQIGGSFQFP* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01276 1123 SUPERFAMILY RING/U-box 92 161 - -
Rops1g01276 1123 Pfam RING/Ubox like zinc-binding domain 109 158 - -
Rops1g01276 1123 SUPERFAMILY Nucleotide-diphospho-sugar transferases 368 696 IPR029044 -
Rops1g01276 1123 FunFam Cellulose synthase-like protein D3 90 172 - -
Rops1g01276 1123 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 554 709 IPR029044 -
Rops1g01276 1123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 172 IPR013083 -
Rops1g01276 1123 FunFam cellulose synthase-like protein D3 558 695 - -
Rops1g01276 1123 Pfam Cellulose synthase 353 1113 IPR005150 GO:0016020|GO:0016760|GO:0030244
Rops1g01276 1123 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 252 1093 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01276 Rops-Chr1 29145796 29150476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01276 7 1123 Glycosyltransferase AT3G03050 76.841 0.0 1790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01276 K20924 - gmx:100813900 1987.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01276 1 29145796 29150476 Rops1g01276 1 29145796 29150476 ECH